Cardoso João C R, Félix Rute C, Power Deborah M
Comparative Molecular and Integrative Biology, Centre of Marine Sciences, Faro, Portugal.
PLoS One. 2014 Mar 20;9(3):e92220. doi: 10.1371/journal.pone.0092220. eCollection 2014.
Nematodes and arthropods are the most speciose animal groups and possess Class 2 B1 G-protein coupled receptors (GPCRs). Existing models of invertebrate Class 2 B1 GPCR evolution are mainly centered on Caenorhabditis elegans and Drosophila melanogaster and a few other nematode and arthropod representatives. The present study reevaluates the evolution of metazoan Class 2 B1 GPCRs and orthologues by exploring the receptors in several nematode and arthropod genomes and comparing them to the human receptors. Three novel receptor phylogenetic clusters were identified and designated cluster A, cluster B and PDF-R-related cluster. Clusters A and B were identified in several nematode and arthropod genomes but were absent from D. melanogaster and Culicidae genomes, whereas the majority of the members of the PDF-R-related cluster were from nematodes. Cluster A receptors were nematode and arthropod-specific but shared a conserved gene environment with human receptor loci. Cluster B members were orthologous to human GCGR, PTHR and Secretin members with which they probably shared a common origin. PDF-R and PDF-R related clusters were present in representatives of both nematodes and arthropods. The results of comparative analysis of GPCR evolution and diversity in protostomes confirm previous notions that C. elegans and D. melanogaster genomes are not good representatives of nematode and arthropod phyla. We hypothesize that at least four ancestral Class 2 B1 genes emerged early in the metazoan radiation, which after the protostome-deuterostome split underwent distinct selective pressures that resulted in duplication and deletion events that originated the current Class 2 B1 GPCRs in nematode and arthropod genomes.
线虫和节肢动物是物种最为丰富的动物类群,并且拥有2B1类G蛋白偶联受体(GPCRs)。现有的无脊椎动物2B1类GPCR进化模型主要集中在秀丽隐杆线虫、黑腹果蝇以及其他一些线虫和节肢动物代表物种上。本研究通过探索几种线虫和节肢动物基因组中的受体,并将它们与人类受体进行比较,重新评估了后生动物2B1类GPCR及其直系同源物的进化。鉴定出了三个新的受体系统发育簇,分别命名为簇A、簇B和PDF-R相关簇。簇A和簇B在几种线虫和节肢动物基因组中被鉴定出来,但在黑腹果蝇和蚊科基因组中不存在,而PDF-R相关簇的大多数成员来自线虫。簇A受体是线虫和节肢动物特有的,但与人类受体基因座共享一个保守的基因环境。簇B成员与人类胰高血糖素受体(GCGR)、甲状旁腺激素受体(PTHR)和促胰液素成员直系同源,它们可能有共同的起源。PDF-R和PDF-R相关簇存在于线虫和节肢动物的代表物种中。对原口动物中GPCR进化和多样性的比较分析结果证实了之前的观点,即秀丽隐杆线虫和黑腹果蝇基因组不能很好地代表线虫和节肢动物门。我们假设至少四个祖先2B1类基因在后生动物辐射早期出现,在原口动物 - 后口动物分裂后经历了不同的选择压力,导致了复制和缺失事件,从而形成了线虫和节肢动物基因组中当前的2B1类GPCR。