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周质菌的壁陷:介观水动力模拟研究。

Wall entrapment of peritrichous bacteria: a mesoscale hydrodynamics simulation study.

机构信息

Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Jülich and JARA, D-52425 Jülich, Germany.

出版信息

Soft Matter. 2020 May 28;16(20):4866-4875. doi: 10.1039/d0sm00571a. Epub 2020 May 19.

Abstract

Microswimmers such as E. coli bacteria accumulate and exhibit an intriguing dynamics near walls, governed by hydrodynamic and steric interactions. Insight into the underlying mechanisms and predominant interactions demand a detailed characterization of the entrapment process. We employ a mesoscale hydrodynamics simulation approach to study entrapment of an E. coli-type cell at a no-slip wall. The cell is modeled by a spherocylindrical body with several explicit helical flagella. Three stages of the entrapment process can be distinguished: the approaching regime, where a cell swims toward a wall on a nearly straight trajectory; a scattering regime, where the cell touches the wall and reorients; and a surface-swimming regime. Our simulations show that steric interactions may dominate the entrapment process, yet, hydrodynamic interactions slow down the adsorption dynamics close to the boundary and imply a circular motion on the wall. The locomotion of the cell is characterized by a strong wobbling dynamics, with cells preferentially pointing toward the wall during surface swimming.

摘要

微泳者,如大肠杆菌,在靠近壁面时会聚集并表现出有趣的动力学行为,这是由流体动力和空间位阻相互作用所决定的。深入了解潜在的机制和主要相互作用需要对捕获过程进行详细的描述。我们采用介观流体动力学模拟方法来研究在无滑移壁面处捕获一种大肠杆菌型细胞的过程。该细胞采用具有几个明确螺旋鞭毛的球柱形体来建模。可以区分捕获过程的三个阶段:接近阶段,其中细胞沿几乎直线轨迹游向壁面;散射阶段,其中细胞接触壁面并重新定向;以及表面游动阶段。我们的模拟表明,空间位阻相互作用可能主导捕获过程,然而,流体动力相互作用在靠近边界处会减缓吸附动力学,并暗示在壁面上的圆周运动。细胞的运动特征是强烈的摆动动力学,在表面游动时,细胞优先指向壁面。

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