• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

莱茵衣藻线粒体中的转运RNA基因与遗传密码

Transfer RNA genes and the genetic code in Chlamydomonas reinhardtii mitochondria.

作者信息

Boer P H, Gray M W

机构信息

Department of Biochemistry, Dalhousie University, Halifax, Nova Scotia, Canada.

出版信息

Curr Genet. 1988 Dec;14(6):583-90. doi: 10.1007/BF00434084.

DOI:10.1007/BF00434084
PMID:3242866
Abstract

Only three tRNA genes are present within a sequenced 12.35 kbp region of the 15.8 kbp mtDNA of Chlamydomonas reinhardtii, a unicellular green alga. The corresponding tRNAs, whose anticodons are specific for TGG (Trp), CAA/G (Gln) and ATG (Met) codons, all display conventional secondary structures. The tRNA(Met) gene encodes an elongator rather than initiator species. The standard genetic code is used in C. reinhardtii mitochondria, but codon distribution is highly biased: in a collection of six identified protein coding genes, nine codons (including TGA) are not used at all, while four other sense codons occur very infrequently. In spite of the absence of certain codons, a minimum of 23 tRNAs (assuming separate initiator and elongator tRNAs(Met) are used) is needed to translate the C. reinhardtii mitochondrial genetic code. It appears unlikely that this minimal tRNA set is encoded by C. reinhardtii mtDNA.

摘要

在单细胞绿藻莱茵衣藻15.8kbp的线粒体DNA(mtDNA)中,经测序的12.35kbp区域内仅存在3个tRNA基因。相应的tRNA,其反密码子分别特异性对应TGG(色氨酸)、CAA/G(谷氨酰胺)和ATG(甲硫氨酸)密码子,均呈现传统的二级结构。tRNA(甲硫氨酸)基因编码的是延长因子而非起始因子类型。莱茵衣藻线粒体使用标准遗传密码,但密码子分布存在高度偏倚:在6个已鉴定的蛋白质编码基因集合中,9个密码子(包括TGA)根本未被使用,而其他4个有义密码子出现频率极低。尽管某些密码子不存在,但要翻译莱茵衣藻线粒体遗传密码,至少需要23个tRNA(假设使用单独的起始因子和延长因子tRNA(甲硫氨酸))。看来这个最小的tRNA集合不太可能由莱茵衣藻mtDNA编码。

相似文献

1
Transfer RNA genes and the genetic code in Chlamydomonas reinhardtii mitochondria.莱茵衣藻线粒体中的转运RNA基因与遗传密码
Curr Genet. 1988 Dec;14(6):583-90. doi: 10.1007/BF00434084.
2
Organization and expression of algal (Chlamydomonas reinhardtii) mitochondrial DNA.藻类(莱茵衣藻)线粒体DNA的组织与表达
Philos Trans R Soc Lond B Biol Sci. 1988 May 31;319(1193):135-47. doi: 10.1098/rstb.1988.0038.
3
Complete sequence of the mitochondrial DNA of Chlamydomonas eugametos.衣藻线粒体DNA的完整序列。
Plant Mol Biol. 1998 Jan;36(2):285-95. doi: 10.1023/a:1005995718091.
4
Codon recognition rules in yeast mitochondria.酵母线粒体中的密码子识别规则。
Proc Natl Acad Sci U S A. 1980 Jun;77(6):3167-70. doi: 10.1073/pnas.77.6.3167.
5
Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequences of six mitochondrial tRNAs.基于六种线粒体tRNA序列的粗糙脉孢菌线粒体遗传密码和密码子阅读模式的新特征
Proc Natl Acad Sci U S A. 1980 Jun;77(6):3159-63. doi: 10.1073/pnas.77.6.3159.
6
Genes encoding a subunit of respiratory NADH dehydrogenase (ND1) and a reverse transcriptase-like protein (RTL) are linked to ribosomal RNA gene pieces in Chlamydomonas reinhardtii mitochondrial DNA.编码呼吸型NADH脱氢酶亚基(ND1)和类逆转录酶蛋白(RTL)的基因与莱茵衣藻线粒体DNA中的核糖体RNA基因片段相连。
EMBO J. 1988 Nov;7(11):3501-8. doi: 10.1002/j.1460-2075.1988.tb03226.x.
7
Genes for respiratory chain proteins and ribosomal RNAs are present on a 16-kilobase-pair DNA species from Chlamydomonas reinhardtii mitochondria.莱茵衣藻线粒体中一个16千碱基对的DNA片段上存在着呼吸链蛋白和核糖体RNA的基因。
Proc Natl Acad Sci U S A. 1985 May;82(10):3340-4. doi: 10.1073/pnas.82.10.3340.
8
The mitochondrial DNA of the amoeboid protozoon, Acanthamoeba castellanii: complete sequence, gene content and genome organization.阿米巴样原生动物卡氏棘阿米巴的线粒体DNA:完整序列、基因内容和基因组组织
J Mol Biol. 1995 Feb 3;245(5):522-37. doi: 10.1006/jmbi.1994.0043.
9
Comparison of codon usage and tRNAs in mitochondrial genomes of Candida species.念珠菌属线粒体基因组中密码子使用情况与转运RNA的比较。
Biosystems. 2007 Sep-Oct;90(2):362-70. doi: 10.1016/j.biosystems.2006.09.039. Epub 2006 Oct 5.
10
The URF 5 gene of Chlamydomonas reinhardtii mitochondria: DNA sequence and mode of transcription.莱茵衣藻线粒体的URF 5基因:DNA序列及转录模式。
EMBO J. 1986 Jan;5(1):21-8. doi: 10.1002/j.1460-2075.1986.tb04172.x.

引用本文的文献

1
Genetic ablation of the mitoribosome in the malaria parasite sensitizes it to antimalarials that target mitochondrial functions.在疟原虫中遗传敲除线粒体核糖体使其对靶向线粒体功能的抗疟药物敏感。
J Biol Chem. 2020 May 22;295(21):7235-7248. doi: 10.1074/jbc.RA120.012646. Epub 2020 Apr 9.
2
Piece by piece: Building a ribozyme. 一片一片地:构建核酶。
J Biol Chem. 2020 Feb 21;295(8):2313-2323. doi: 10.1074/jbc.REV119.009929. Epub 2020 Jan 17.
3
Movement of DNA across the chloroplast envelope: Implications for the transfer of promiscuous DNA.

本文引用的文献

1
Sequence homology between the 32K dalton and the D2 chloroplast membrane polypeptides of Chlamydomonas reinhardii.莱茵衣藻 32K 道尔顿与 D2 叶绿体膜多肽之间的序列同源性。
Plant Mol Biol. 1984 Nov;3(6):363-70. doi: 10.1007/BF00033383.
2
Genes for tRNA(Asp), tRNA (Pro), tRNA (Tyr) and two tRNAs (Ser) in wheat mitochondrial DNA.小麦线粒体 DNA 中的 tRNA(Asp)、tRNA(Pro)、tRNA(Tyr)和两个 tRNA(Ser)基因。
Plant Mol Biol. 1988 May;10(3):251-62. doi: 10.1007/BF00027402.
3
APhaseolus vulgaris mitochondrial tRNA(Leu) is identical to its cytoplasmic counterpart: sequencing andin vivo transcription of the gene corresponding to the cytoplasmic tRNA(Leu.).
DNA 在叶绿体被膜间的运动:对转座 DNA 转移的启示。
Photosynth Res. 1995 Nov;46(1-2):329-37. doi: 10.1007/BF00020448.
4
Allotopic expression of mitochondrial-encoded genes in mammals: achieved goal, undemonstrated mechanism or impossible task?哺乳动物中线粒体编码基因的异位表达:已实现的目标、未证明的机制还是不可能的任务?
Nucleic Acids Res. 2011 Jan;39(1):225-34. doi: 10.1093/nar/gkq769. Epub 2010 Sep 7.
5
The mitochondrial ATP synthase of chlorophycean algae contains eight subunits of unknown origin involved in the formation of an atypical stator-stalk and in the dimerization of the complex.绿藻纲藻类的线粒体ATP合酶包含八个来源不明的亚基,这些亚基参与非典型定子柄的形成以及该复合体的二聚化。
J Bioenerg Biomembr. 2006 Dec;38(5-6):271-82. doi: 10.1007/s10863-006-9046-x.
6
Mitochondrial genome sequence evolution in Chlamydomonas.衣藻线粒体基因组序列的进化
Genetics. 2007 Feb;175(2):819-26. doi: 10.1534/genetics.106.063156. Epub 2006 Dec 6.
7
An algal nucleus-encoded subunit of mitochondrial ATP synthase rescues a defect in the analogous human mitochondrial-encoded subunit.线粒体ATP合酶的一个藻类核编码亚基挽救了人类线粒体编码的类似亚基中的缺陷。
Mol Biol Cell. 2002 Nov;13(11):3836-44. doi: 10.1091/mbc.e02-05-0306.
8
The complete mitochondrial DNA sequence of Scenedesmus obliquus reflects an intermediate stage in the evolution of the green algal mitochondrial genome.斜生栅藻的完整线粒体DNA序列反映了绿藻线粒体基因组进化的一个中间阶段。
Genome Res. 2000 Jun;10(6):819-31. doi: 10.1101/gr.10.6.819.
9
The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor. Two radically different evolutionary patterns within green algae.橄榄肾形藻和微小柄藻的完整线粒体DNA序列。绿藻内部两种截然不同的进化模式。
Plant Cell. 1999 Sep;11(9):1717-30. doi: 10.1105/tpc.11.9.1717.
10
The mitochondrial genome of the sea anemone Metridium senile (Cnidaria): introns, a paucity of tRNA genes, and a near-standard genetic code.海葵(刺胞动物门)老年细指海葵的线粒体基因组:内含子、tRNA基因稀少以及近乎标准的遗传密码。
Genetics. 1998 Mar;148(3):1091-108. doi: 10.1093/genetics/148.3.1091.
菜豆线粒体 tRNA(亮氨酸)与其细胞质对应物完全相同:对应于细胞质 tRNA(亮氨酸)的基因的测序和体内转录。
Plant Mol Biol. 1987 Jan;10(1):13-9. doi: 10.1007/BF00014182.
4
Mitochondrial DNA of Chlamydomonas reinhardtii: the DNA sequence of a region showing homology with mammalian URF2.莱茵衣藻的线粒体 DNA:与哺乳动物 URF2 具有同源性的区域的 DNA 序列。
Curr Genet. 1984 Dec;9(1):75-82. doi: 10.1007/BF00396207.
5
The apocytochrome b gene in maize mitochondria does not contain introns and is preceded by a potential ribosome binding site.玉米线粒体中的细胞色素 b 基因不含内含子,且其上游存在一个潜在的核糖体结合位点。
EMBO J. 1984 Sep;3(9):2107-13. doi: 10.1002/j.1460-2075.1984.tb02098.x.
6
A model for the tertiary structure of mammalian mitochondrial transfer RNAs lacking the entire 'dihydrouridine' loop and stem.一种缺乏完整“二氢尿嘧啶”环和茎的哺乳动物线粒体转移核糖核酸三级结构模型。
EMBO J. 1983;2(8):1309-21. doi: 10.1002/j.1460-2075.1983.tb01586.x.
7
The tRNA genes punctuate the reading of genetic information in human mitochondrial DNA.转运RNA基因在人类线粒体DNA中对遗传信息的读取起到标点作用。
Cell. 1980 Nov;22(2 Pt 2):393-403. doi: 10.1016/0092-8674(80)90350-5.
8
Sequence and gene organization of mouse mitochondrial DNA.小鼠线粒体DNA的序列与基因组织
Cell. 1981 Oct;26(2 Pt 2):167-80. doi: 10.1016/0092-8674(81)90300-7.
9
Sequence and organization of the human mitochondrial genome.人类线粒体基因组的序列与组织
Nature. 1981 Apr 9;290(5806):457-65. doi: 10.1038/290457a0.
10
Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome.牛线粒体DNA的完整序列。哺乳动物线粒体基因组的保守特征。
J Mol Biol. 1982 Apr 25;156(4):683-717. doi: 10.1016/0022-2836(82)90137-1.