Zhuang Hongkai, Ma Zuyi, Huang Kaijun, Zhou Zixuan, Huang Bowen, Sun Zhonghai, Hou Baohua, Zhang Chuanzhao
From the Department of General Surgery, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou.
Shantou University of Medical College, Shantou.
Pancreas. 2020 May/Jun;49(5):655-662. doi: 10.1097/MPA.0000000000001542.
This study developed a prognosis-associated miRNA (PAM)-based risk score system to predict overall survival for pancreatic cancer.
We screened potential PAMs using bioinformatics technology. A risk score system integrating the PAMs was established, and the predictive value was evaluated. The targets of these PAMs were identified and functional enrichment analysis was performed.
Seven PAMs (hsa-mir-188, hsa-mir-1301, hsa-mir-424, hsa-mir-5010, hsa-mir-584, hsa-mir-5091, and hsa-mir-3613) were identified. We also developed a risk score system, which showed a high Harrell concordance index (C-index, 0.723) for overall survival in the Cancer Genome Atlas data sets. The areas under the curve of the receiver operating characteristic curve at the 1-, 2-, and 3-year survival points were 0.718, 0.832, and 0.903, respectively. In addition, both the C-index and the areas under the curve for recurrence-free survival showed a good outcome, indicating that the system had a satisfactory predictive power. Furthermore, 49 target genes of PAMs were identified. Functional enrichment analysis revealed that these targets may be involved in various biological pathways, including the transforming growth factor β signaling pathway, Notch signaling, and downregulation of SMAD2/3.
The findings of this study suggest that the 7-miRNA-based risk score system is a promising prognostic model for pancreatic cancer.
本研究开发了一种基于预后相关微小RNA(PAM)的风险评分系统,以预测胰腺癌的总生存期。
我们使用生物信息学技术筛选潜在的PAM。建立了整合PAM的风险评分系统,并评估其预测价值。鉴定了这些PAM的靶标并进行了功能富集分析。
鉴定出7种PAM(hsa-mir-188、hsa-mir-1301、hsa-mir-424、hsa-mir-5010、hsa-mir-584、hsa-mir-5091和hsa-mir-3613)。我们还开发了一种风险评分系统,该系统在癌症基因组图谱数据集中显示出较高的Harrell一致性指数(C指数,0.723)用于总生存期预测。在第1、2和3年生存点的受试者工作特征曲线下面积分别为0.718、0.832和0.903。此外,无复发生存期的C指数和曲线下面积均显示出良好的结果,表明该系统具有令人满意的预测能力。此外,鉴定出49个PAM的靶基因。功能富集分析表明,这些靶标可能参与多种生物学途径,包括转化生长因子β信号通路、Notch信号通路以及SMAD2/3的下调。
本研究结果表明,基于7种微小RNA的风险评分系统是一种有前景的胰腺癌预后模型。