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从一名有复发性尿路感染症状的女性身上分离出的咽峡炎链球菌UMB7768的基因组序列草图

Draft Genome Sequence of Streptococcus anginosus UMB7768, Isolated from a Woman with Recurrent UTI Symptoms.

作者信息

Miller Sarah, Miller-Ensminger Taylor, Voukadinova Adelina, Wolfe Alan J, Putonti Catherine

机构信息

Bioinformatics Program, Loyola University Chicago, Chicago, Illinois, USA.

Department of Microbiology and Immunology, Stritch School of Medicine, Loyola University Chicago, Maywood, Illinois, USA.

出版信息

Microbiol Resour Announc. 2020 May 21;9(21):e00418-20. doi: 10.1128/MRA.00418-20.

DOI:10.1128/MRA.00418-20
PMID:32439677
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7242679/
Abstract

recently was implicated as a pathogen involved in urinary tract infections. A strain of was isolated from the female urogenital tract. Here, we present the draft genome sequence of strain UMB7768.

摘要

最近被认为是涉及尿路感染的一种病原体。从女性泌尿生殖道分离出了一株[该病原体名称未给出]。在此，我们展示了[该病原体名称未给出]菌株UMB7768的基因组序列草图。

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本文引用的文献

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Culturing of female bladder bacteria reveals an interconnected urogenital microbiota.女性膀胱细菌培养揭示了相互关联的泌尿生殖微生物组。
Nat Commun. 2018 Apr 19;9(1):1557. doi: 10.1038/s41467-018-03968-5.
2
Sites of infection associated with Streptococcus anginosus group among children.儿童中与咽峡炎链球菌群相关的感染部位
J Infect Chemother. 2018 Feb;24(2):99-102. doi: 10.1016/j.jiac.2017.09.011. Epub 2017 Oct 17.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
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RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.RASTtk：一种用于构建定制注释管道和批量注释基因组的RAST算法的模块化可扩展实现。
Sci Rep. 2015 Feb 10;5:8365. doi: 10.1038/srep08365.
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The female urinary microbiome: a comparison of women with and without urgency urinary incontinence.女性泌尿微生物群：有和没有急迫性尿失禁的女性的比较。
mBio. 2014 Jul 8;5(4):e01283-14. doi: 10.1128/mBio.01283-14.
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Molecular pathogenicity of Streptococcus anginosus.咽峡炎链球菌的分子致病性
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Community interactions of oral streptococci.口腔链球菌的群落相互作用。
Adv Appl Microbiol. 2014;87:43-110. doi: 10.1016/B978-0-12-800261-2.00002-5.
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Urine is not sterile: use of enhanced urine culture techniques to detect resident bacterial flora in the adult female bladder.尿液并非无菌：采用强化尿液培养技术检测成年女性膀胱中的常驻细菌菌群。
J Clin Microbiol. 2014 Mar;52(3):871-6. doi: 10.1128/JCM.02876-13. Epub 2013 Dec 26.
9
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.