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基于计算机的消减蛋白质组学方法鉴定. 的潜在药物靶点

In Silico Subtractive Proteomics Approach for Identification of Potential Drug Targets in .

机构信息

Department of Bioinformatics and Biotechnology, Government College University, Faisalabad, Punjab 38000, Pakistan.

Department of Medical Laboratories, College of Applied Medical Sciences, Qassim University, Buraydah 52571, Saudi Arabia.

出版信息

Int J Environ Res Public Health. 2020 May 22;17(10):3644. doi: 10.3390/ijerph17103644.

Abstract

is a uropathogenic bacteria responsible for acute urinary tract infections (UTIs) mainly in young female patients. Patients suffering from urinary catheterization, pregnant patients, the elderly as well as those with nosocomial UTIs are at greater risk of the colonizing infection. The causative factors include benign prostatic hyperplasia, indwelling catheter, neurogenic bladder, pregnancy, and history of frequent UTIs. Recent findings have exhibited that is resistant to several antimicrobial agents. Moreover, there is a global concern regarding the increasing level of antimicrobial resistance, which leads to treatment failure and reduced effectiveness of broad-spectrum antimicrobials. Therefore, a novel approach is being utilized to combat resistant microbes since the past few years. Subtractive proteome analysis has been performed with the entire proteome of strain American Type Culture Collection (ATCC) 15305 using several bioinformatics servers and software. The proteins that were non-homologous to humans and bacteria were identified for metabolic pathway analysis. Only four cytoplasmic proteins were found possessing the potential of novel drug target candidates. The development of innovative therapeutic agents by targeting the inhibition of any essential proteins may disrupt the metabolic pathways specific to the pathogen, thus causing destruction as well as eradication of the pathogen from a particular host. The identified targets can facilitate in designing novel and potent drugs against strain ATCC 15305.

摘要

是一种尿路致病性细菌,主要引起年轻女性的急性尿路感染(UTI)。患有导尿、妊娠、老年和医院获得性 UTI 的患者更容易发生定植感染。致病因素包括良性前列腺增生、留置导管、神经性膀胱、妊娠和频繁尿路感染史。最近的研究结果表明,对几种抗菌药物具有耐药性。此外,人们对不断增加的抗菌药物耐药性水平感到担忧,这导致治疗失败和广谱抗菌药物效果降低。因此,过去几年来一直在采用新方法来对抗耐药微生物。使用几种生物信息学服务器和软件对 菌株美国模式培养物集存库(ATCC)15305 的整个蛋白质组进行了消减蛋白质组分析。对非同源人类和细菌的蛋白质进行了代谢途径分析。只发现了四个具有新型药物靶标候选物潜力的细胞质蛋白。通过抑制任何必需蛋白质的方法来开发创新的治疗药物,可能会破坏病原体特有的代谢途径,从而导致病原体从特定宿主中被破坏和根除。鉴定出的靶标可以帮助设计针对 ATCC 15305 菌株的新型有效药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94e5/7277342/d9d6739ce35e/ijerph-17-03644-g001.jpg

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