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用于银屑病关节炎诊断的遗传风险评分评估

Evaluation of a Genetic Risk Score for Diagnosis of Psoriatic Arthritis.

作者信息

Smith Mary Patricia, Ly Karen, Thibodeaux Quinn, Beck Kristen, Yang Eric, Sanchez Isabelle, Nititham Joanne, Bhutani Tina, Liao Wilson

机构信息

Department of Dermatology, University of California, San Francisco, CA, USA.

Chicago Medical School, Rosalind Franklin University of Medicine and Science, North Chicago, IL, USA.

出版信息

J Psoriasis Psoriatic Arthritis. 2020 Apr;5(2):61-67. doi: 10.1177/2475530320910814. Epub 2020 Mar 4.

Abstract

BACKGROUND

Diagnosis of psoriatic arthritis (PsA) can be challenging, resulting in delays that contribute to irreversible joint damage, reduced quality of life, and increased mortality.

OBJECTIVE

Use genetic markers to develop and evaluate a PsA genetic risk score (GRS) for its ability to discriminate between psoriasis (PsO) only and PsO with PsA among a psoriatic cohort with full genome-wide genotype data.

METHODS

Genome-wide single-nucleotide polymorphism genotyping was performed on 724 psoriatic patients. A set of 11 candidate risk genes previously shown to be preferentially associated with PsO or PsA were selected. To evaluate the cumulative effects of these risk loci, a PsA GRS was developed using an unweighted risk allele count (cGRS) and a weighted (wGRS) approach. Additional analyses included only human leukocyte antigen (HLA) risk alleles.

RESULTS

The discriminative power attributable to each GRS was evaluated by calculating the areas under the receiver operator characteristic curve (AUROC). The AUROC for the wGRS is 56.2% versus 54.1% for the cGRS, and the AUROC for the HLA-only wGRS model was 56.9% versus 55.7% for the HLA-only cGRS.

CONCLUSION

The AUROC of 56.9% for HLA-only wGRS indicates that this approach has the greatest power in discriminating PsA from PsO among these models. Given that an AUROC of 56.9% is quite modest, this study suggests that using a small number of well-validated genetic loci provides limited predictive power for PsA, and that future approaches may benefit from using a larger number of genetic loci.

摘要

背景

银屑病关节炎(PsA)的诊断可能具有挑战性,会导致延误,进而造成不可逆转的关节损伤、生活质量下降和死亡率上升。

目的

利用遗传标记开发并评估银屑病关节炎遗传风险评分(GRS),以判断其在具有全基因组基因型数据的银屑病队列中区分单纯银屑病(PsO)和合并PsA的PsO的能力。

方法

对724例银屑病患者进行全基因组单核苷酸多态性基因分型。选择一组先前显示与PsO或PsA优先相关的11个候选风险基因。为评估这些风险位点的累积效应,采用未加权风险等位基因计数(cGRS)和加权(wGRS)方法开发了PsA GRS。其他分析仅包括人类白细胞抗原(HLA)风险等位基因。

结果

通过计算受试者操作特征曲线下面积(AUROC)评估每个GRS的鉴别能力。wGRS的AUROC为56.2%,而cGRS为54.1%,仅HLA的wGRS模型的AUROC为56.9%,而仅HLA的cGRS为55.7%。

结论

仅HLA的wGRS的AUROC为56.9%,表明该方法在这些模型中区分PsA和PsO的能力最强。鉴于56.9%的AUROC相当有限,本研究表明,使用少数经过充分验证的遗传位点对PsA的预测能力有限,未来的方法可能受益于使用更多的遗传位点。

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