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PC4 样结构域大家族——生命所有领域中相似的折叠结构和功能。

The large family of PC4-like domains - similar folds and functions throughout all kingdoms of life.

机构信息

Institute of Structural Biology, Helmholtz Zentrum München - German Research Center for Environmental Health , Neuherberg, Germany.

Institute of Pharmaceutical Biotechnology, Ulm University , Ulm, Germany.

出版信息

RNA Biol. 2020 Sep;17(9):1228-1238. doi: 10.1080/15476286.2020.1761639. Epub 2020 May 31.

Abstract

RNA- and DNA-binding domains are essential building blocks for specific regulation of gene expression. While a number of canonical nucleic acid binding domains share sequence and structural conservation, others are less obviously linked by evolutionary traits. In this review, we describe a protein fold of about 150 aa in length, bearing a conserved β-β-β-β-α-linker-β-β-β-β-α topology and similar nucleic acid binding properties but no apparent sequence conservation. The same overall fold can also be achieved by dimerization of two proteins, each bearing a β-β-β-β-α topology. These proteins include but are not limited to the transcription factors PC4 and P24 from humans and plants, respectively, the human RNA-transport factor Pur-α (also termed PURA), as well as the ssDNA-binding SP_0782 protein from and the bacteriophage coat proteins PP7 and MS2. Besides their common overall topology, these proteins share common nucleic acids binding surfaces and thus functional similarity. We conclude that these PC4-like domains include proteins from all kingdoms of life and are much more abundant than previously known.

摘要

RNA 和 DNA 结合域是特定调控基因表达的基本结构单元。虽然许多典型的核酸结合域具有序列和结构的保守性,但其他的结合域则通过进化特征不太明显地联系在一起。在这篇综述中,我们描述了一种约 150 个氨基酸长的蛋白质折叠结构,具有保守的β-β-β-β-α 连接子-β-β-β-β-α 拓扑结构和相似的核酸结合特性,但没有明显的序列保守性。同样的整体折叠结构也可以通过两个具有β-β-β-β-α 拓扑结构的蛋白质的二聚化来实现。这些蛋白质包括但不限于人类和植物的转录因子 PC4 和 P24、人类 RNA 转运因子 Pur-α(也称为 PURA),以及来自 和噬菌体衣壳蛋白 PP7 和 MS2 的 ssDNA 结合蛋白 SP_0782。除了它们常见的整体拓扑结构外,这些蛋白质还具有共同的核酸结合表面,因此具有功能上的相似性。我们得出结论,这些 PC4 样结构域包含来自所有生命领域的蛋白质,并且比以前已知的要丰富得多。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6006/7549692/66afe9efa742/KRNB_A_1761639_F0001_OC.jpg

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