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全外显子组测序和全基因组关联研究鉴定汉族人群肌少症的新风险基因。

Whole-exome sequencing and genome-wide association studies identify novel sarcopenia risk genes in Han Chinese.

机构信息

School of Medical Instruments and Food Engineering, University of Shanghai for Science and Technology, Shanghai, PR China.

Center for Genetic Epidemiology and Genomics, School of Public Health, Soochow University, Jiangsu, PR China.

出版信息

Mol Genet Genomic Med. 2020 Aug;8(8):e1267. doi: 10.1002/mgg3.1267. Epub 2020 Jun 1.

Abstract

Sarcopenia is a complex polygenic disease, and its molecular mechanism is still unclear. Whole lean body mass (WLBM) is a heritable trait predicting sarcopenia. To identify genomic loci underlying, we performed a whole-exome sequencing (WES) of WLBM variation with high sequencing depth (more than 40*) in 101 Chinese subjects. We then replicated in the major findings in the large-scale UK Biobank (UKB) cohort (N = 217,822) for WLBM. The results of four single-nucleotide polymorphisms (SNPs) were significant both in the discovery stage and replication stage: SNP rs740681 (discovery p = 1.66 × 10 , replication p = .05), rs2272303 (discovery p = 3.20 × 10 , replication p = 3.10 × 10 ), rs11170413 (discovery p = 3.99 × 10 , replication p = 2.90 × 10 ), and rs2272302 (discovery p = 9.13 × 10 , replication p = 3.10 × 10 ). We combined p values of the significant SNPs. Functional annotations highlighted two candidate genes, including FZR1 and SOAT2, that may exert pleiotropic effects to the development of body mass. Our findings provide useful insights that further enhance our understanding of genetic interplay in sarcopenia.

摘要

肌肉减少症是一种复杂的多基因疾病,其分子机制尚不清楚。全身去脂体重(WLBM)是一种遗传性特征,可预测肌肉减少症。为了确定潜在的基因组位点,我们对 101 名中国受试者的 WLBM 变异进行了高测序深度(超过 40*)的全外显子组测序(WES)。然后,我们在 UKB 队列(N=217822)的大型研究中对主要发现进行了复制。在发现阶段和复制阶段,四个单核苷酸多态性(SNP)的结果均具有统计学意义:SNP rs740681(发现 p=1.66×10 ,复制 p=0.05),rs2272303(发现 p=3.20×10 ,复制 p=3.10×10 ),rs11170413(发现 p=3.99×10 ,复制 p=2.90×10 )和 rs2272302(发现 p=9.13×10 ,复制 p=3.10×10 )。我们将有意义的 SNP 的 p 值合并。功能注释突出了两个候选基因,包括 FZR1 和 SOAT2,它们可能对体重的发展产生多效性影响。我们的研究结果提供了有用的见解,进一步增强了我们对肌肉减少症遗传相互作用的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8313/7434604/8d1500a3d782/MGG3-8-e1267-g001.jpg

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