Orthopaedics, USU-Walter Reed Department of Surgery, Bethesda, Maryland.
Section of Orthopaedics and Sports Medicine, Department of Molecular Medicine and Surgery, Karolinska Institute, Karolinska University Hospital, Stockholm, Sweden.
J Orthop Res. 2020 Oct;38(10):2149-2156. doi: 10.1002/jor.24763. Epub 2020 Jul 31.
Treatment decisions in patients with metastatic bone disease rely on accurate survival estimation. We developed the original PATHFx models using expensive, proprietary software and now seek to provide a more cost-effective solution. Using open-source machine learning software to create PATHFx version 2.0, we asked whether PATHFx 2.0 could be created using open-source methods and externally validated in two unique patient populations. The training set of a well-characterized, database records of 189 patients and the bnlearn package within R Version 3.5.1 (R Foundation for Statistical Computing), was used to establish a series of Bayesian belief network models designed to predict survival at 1, 3, 6, 12, 18, and 24 months. Each was externally validated in both a Scandinavian (n = 815 patients) and a Japanese (n = 261 patients) data set. Brier scores and receiver operating characteristic curves to assessed discriminatory ability. Decision curve analysis (DCA) evaluated whether models should be used clinically. DCA showed that the model should be used clinically at all time points in the Scandinavian data set. For the 1-month time point, DCA of the Japanese data set suggested to expect better outcomes assuming all patients will survive greater than 1 month. Brier scores for each curve demonstrate that the models are accurate at each time point. Statement of Clinical Significance: we successfully transitioned to PATHFx 2.0 using open-source software and externally validated it in two unique patient populations, which can be used as a cost-effective option to guide surgical decisions in patients with metastatic bone disease.
在转移性骨病患者的治疗决策中,依赖于准确的生存估计。我们使用昂贵的专有软件开发了原始的 PATHFx 模型,现在寻求提供更具成本效益的解决方案。我们使用开源机器学习软件创建 PATHFx 版本 2.0,询问是否可以使用开源方法创建 PATHFx 2.0,并在两个独特的患者群体中进行外部验证。在一个特征良好的训练集中,数据库记录了 189 名患者,以及 R 版本 3.5.1(R 基金会的统计计算)中的 bnlearn 包,用于建立一系列旨在预测 1、3、6、12、18 和 24 个月生存的贝叶斯置信网络模型。每个模型都在一个斯堪的纳维亚(n=815 名患者)和一个日本(n=261 名患者)数据集进行外部验证。Brier 评分和接受者操作特征曲线评估区分能力。决策曲线分析(DCA)评估模型是否应在临床上使用。DCA 表明,该模型在斯堪的纳维亚数据集的所有时间点都应在临床上使用。对于 1 个月的时间点,日本数据集的 DCA 表明,假设所有患者都能存活超过 1 个月,那么可以预期更好的结果。每条曲线的 Brier 评分表明模型在每个时间点都是准确的。临床意义的陈述:我们成功地使用开源软件过渡到 PATHFx 2.0,并在两个独特的患者群体中进行了外部验证,这可以作为一种具有成本效益的选择,指导转移性骨病患者的手术决策。