从女性尿道分离出的大肠杆菌UMB1353的基因组序列草图
Draft Genome Sequence of Escherichia coli UMB1353, Isolated from the Female Urinary Tract.
作者信息
Crawford Tanea, Miller-Ensminger Taylor, Voukadinova Adelina, Wolfe Alan J, Putonti Catherine
机构信息
Neuroscience Program, Loyola University Chicago, Chicago, Illinois, USA.
Bioinformatics Program, Loyola University Chicago, Chicago, Illinois, USA.
出版信息
Microbiol Resour Announc. 2020 Jun 4;9(23):e00416-20. doi: 10.1128/MRA.00416-20.
Abstract
Here, we present the draft genome sequence of UMB1353, isolated from a patient with a urinary tract infection. The sequence of this antibiotic-resistant strain contains one intact P2-like phage.
摘要
在此，我们展示了从一名尿路感染患者身上分离出的UMB1353的基因组序列草图。这种耐抗生素菌株的序列包含一个完整的P2样噬菌体。
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2
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3
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