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墨西哥登革热病毒(DENV)血清型和基因型遗传多样性的流行病学意义。

Epidemiological implications of the genetic diversification of dengue virus (DENV) serotypes and genotypes in Mexico.

机构信息

Department of Genetics and Molecular Biology, Center for Research and Advanced Studies of the National Polytechnic Institute (CINVESTAV-IPN), Mexico City, Mexico.

Department of Genetics and Molecular Biology, Center for Research and Advanced Studies of the National Polytechnic Institute (CINVESTAV-IPN), Mexico City, Mexico.

出版信息

Infect Genet Evol. 2020 Oct;84:104391. doi: 10.1016/j.meegid.2020.104391. Epub 2020 Jun 3.

Abstract

Variation and clade shifts in dengue virus (DENV) genotypes are responsible for numerous dengue fever outbreaks throughout Latin America in the past decade. Molecular analyses of dengue serotypes have revealed extensive genetic diversification and the emergence of new genotypes in Brazil (DENV-4 genotype I) and elsewhere in tropical and subtropical America. The goal of the present study is to assess the extent to which the adventitious introduction of DENV genotypes and their increasing genetic diversity affects dengue epidemiology in Mexico. A nuanced sequence inspection and phylogenetic analysis of the C-prM nucleotide region of DENV was performed for specimens collecting in 2009 from the Veracruz State, Mexico. Findings were contrasted with specimens collected in adjacent years and analysed based on the epidemiological patterns reported between 1990 and 2019. Additionally, the identification process of various DENV genotypes was assessed, including: (1) DENV-1, genotype V, (2) the DENV-2 Asian/American and Asian II genotypes (3) DENV-3, genotype III, and (4) DENV-4, genotype I. This resulted in the discovery of a distinct genetic cladistic pattern for serotype DENV-2. Lastly, study findings suggest that a correlation exists between the emergence of novel genotypes and genetic diversification, with the increasing incidence of DENV infections in Mexico in 2009.

摘要

在过去十年中,登革热病毒(DENV)基因型的变异和分支转移是拉丁美洲许多登革热疫情爆发的原因。对登革热血清型的分子分析揭示了巴西(DENV-4 基因型 I)和美洲热带和亚热带其他地区广泛的遗传多样化和新基因型的出现。本研究的目的是评估 DENV 基因型的偶然传入及其遗传多样性的增加对墨西哥登革热流行病学的影响。对 2009 年墨西哥韦拉克鲁斯州采集的登革热病毒 C-prM 核苷酸区域的标本进行了细致的序列检查和系统发育分析。结果与相邻年份采集的标本进行了对比,并根据 1990 年至 2019 年报告的流行病学模式进行了分析。此外,还评估了各种 DENV 基因型的鉴定过程,包括:(1)DENV-1,基因型 V,(2)DENV-2 亚洲/美洲和亚洲 II 基因型,(3)DENV-3,基因型 III,和(4)DENV-4,基因型 I。这导致发现了登革热病毒-2 血清型独特的遗传分支模式。最后,研究结果表明,新基因型的出现与遗传多样化之间存在相关性,2009 年墨西哥登革热感染的发病率不断上升。

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