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蛋白质组学分析揭示了在 …… 中内在无序区域直接募集到应激颗粒。

Proteomic analysis reveals the direct recruitment of intrinsically disordered regions to stress granules in .

机构信息

Michael Smith Laboratories, Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4.

Department of Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.

出版信息

J Cell Sci. 2020 Jul 9;133(13):jcs244657. doi: 10.1242/jcs.244657.

Abstract

Stress granules (SGs) are stress-induced membraneless condensates that store non-translating mRNA and stalled translation initiation complexes. Although metazoan SGs are dynamic compartments where proteins can rapidly exchange with their surroundings, yeast SGs seem largely static. To gain a better understanding of yeast SGs, we identified proteins that sediment after heat shock using mass spectrometry. Proteins that sediment upon heat shock are biased toward a subset of abundant proteins that are significantly enriched in intrinsically disordered regions (IDRs). Heat-induced SG localization of over 80 proteins were confirmed using microscopy, including 32 proteins not previously known to localize to SGs. We found that several IDRs were sufficient to mediate SG recruitment. Moreover, the dynamic exchange of IDRs can be observed using fluorescence recovery after photobleaching, whereas other components remain immobile. Lastly, we showed that the IDR of the Ubp3 deubiquitinase was critical for yeast SG formation. This work shows that IDRs can be sufficient for SG incorporation, can remain dynamic in vitrified SGs, and can play an important role in cellular compartmentalization upon stress.This article has an associated First Person interview with the first author of the paper.

摘要

应激颗粒(SGs)是应激诱导的无膜液滴,可储存非翻译 mRNA 和停滞的翻译起始复合物。尽管后生动物的 SGs 是蛋白质可以与其周围环境快速交换的动态隔室,但酵母 SGs 似乎在很大程度上是静态的。为了更好地了解酵母 SGs,我们使用质谱法鉴定了热休克后沉降的蛋白质。热休克后沉降的蛋白质偏向于一组丰度较高的蛋白质,这些蛋白质在结构上无序区域(IDRs)中显著富集。使用显微镜证实了超过 80 种蛋白质的热诱导 SG 定位,包括 32 种先前不知道定位于 SGs 的蛋白质。我们发现,几个 IDRs 足以介导 SG 招募。此外,可以使用光漂白后荧光恢复观察到 IDRs 的动态交换,而其他成分则保持不动。最后,我们表明,解泛素酶 Ubp3 的 IDR 对于酵母 SG 的形成至关重要。这项工作表明,IDR 足以用于 SG 的掺入,在玻璃化 SG 中仍能保持动态,并且在应激时在细胞区室化中发挥重要作用。本文有一篇与论文第一作者的第一人称访谈。

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