Sharonov Iu A, Pis'menskiĭ V F, Iarmola E G
Mol Biol (Mosk). 1988 Nov-Dec;22(6):1491-506.
In the spectral region 350-800 nm at 4.2 K we measured magnetic circular dichroism (MCD) spectra of the pentacoordinated complex of protcheme with 2-methylimidazole, deoxyleghemoglobin, neutral and alkaline forms of reduced horseradish peroxidase in the equilibrium states, as well as in non-equilibrium states produced by low-temperature photolysis of their carbon monoxide derivatives. Earlier the corresponding results have been obtained for myoglobin, hemoglobin and cytochromes P-450 and P-420. The energies of Fe-N (proximal His) and Fe-N(pyrroles) bonds and their changes upon ligand binding in heme proteins and enzymes were compared with those in the model heme complex thus providing conformational contribution into stereochemistry of the active site. The examples of weak and strong conformational "pressure" on stereochemistry were analysed and observed. If conformational energy contribution into stereochemistry prevails the electronic one the heme stereochemistry remains unchanged on ligand binding as it was observed for leghemoglobin and alkaline horseradish peroxidase. The change of bond energies in myoglobin and hemoglobin on ligand binding are comparable with those in protein free pentacoordinated protoheme, giving an example of weak conformational contribution to heme stereochemistry. The role of protein conformation energy in the modulation of ligand binding properties of heme in leghemoglobin relative to those in myoglobins is discussed. The most striking result were obtained in the study of reduced horseradish peroxidase in the pH region of 6.0-10.2. It was found that such different perturbations as ligand binding and heme-linked ionization of the distal amino acid residue induce identical changes in heme stereochemistry. Neither heme-linked ionization in the carbon monoxide complex nor the geometry of Fe-Co bond affect the heme local structure of photoproducts. These and other findings suggest a very low conformation mobility of horseradish peroxidase whose protein constraints appear to allow only two preferable geometries of specific amino acid residues that form the heme pocket. The role of the two tertiary structure constraints on the heme in the mechanism of horseradish peroxidase function is discussed. It is supposed that one conformation produces a heme environment suitable for two-electron oxidation of the native enzyme to compound I by hydrogen peroxide while another conformation changes the heme stereochemistry in the direction favourable for back reduction of compound I by the substrate to the resting enzyme through two one-electron steps. The switch from one tertiary structure to another is expected to be induced by substrate bind
在4.2K温度下,我们测量了原卟啉与2-甲基咪唑的五配位络合物、脱氧豆血红蛋白、平衡态以及一氧化碳衍生物经低温光解产生的非平衡态下还原辣根过氧化物酶的中性和碱性形式在350 - 800nm光谱区域的磁圆二色性(MCD)光谱。此前已获得肌红蛋白、血红蛋白以及细胞色素P - 450和P - 420的相应结果。将血红素蛋白和酶中Fe - N(近端组氨酸)和Fe - N(吡咯)键的能量及其在配体结合时的变化与模型血红素络合物中的进行比较,从而为活性位点的立体化学提供构象贡献。分析并观察了对立体化学产生弱和强构象“压力”的实例。如果构象能量对立体化学的贡献占主导,而不是电子贡献,那么在配体结合时血红素立体化学保持不变,就像在豆血红蛋白和碱性辣根过氧化物酶中观察到的那样。肌红蛋白和血红蛋白在配体结合时键能的变化与游离蛋白质的五配位原血红素中的变化相当,这是构象对血红素立体化学贡献较弱的一个例子。讨论了蛋白质构象能量在调节豆血红蛋白中血红素相对于肌红蛋白中血红素的配体结合特性方面的作用。在对pH值范围为6.0 - 10.2的还原辣根过氧化物酶的研究中获得了最显著的结果。发现诸如配体结合和远端氨基酸残基的血红素连接电离等如此不同的扰动会在血红素立体化学中引起相同的变化。一氧化碳络合物中的血红素连接电离以及Fe - Co键的几何形状都不会影响光产物的血红素局部结构。这些以及其他发现表明辣根过氧化物酶的构象流动性非常低,其蛋白质限制似乎只允许形成血红素口袋的特定氨基酸残基有两种优选的几何形状。讨论了血红素上的两个三级结构限制在辣根过氧化物酶功能机制中的作用。据推测,一种构象产生一种血红素环境,适合天然酶被过氧化氢双电子氧化为化合物I,而另一种构象则使血红素立体化学朝着有利于底物通过两个单电子步骤将化合物I还原回静止酶的方向变化。预计从一种三级结构到另一种三级结构的转变将由底物结合诱导