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2-[氨基甲酰硫基(2-羟基乙基)氨基]苯甲酸乙酯:晶体结构、 Hirshfeld表面分析及计算研究

2-[Carbamo-thio-yl(2-hy-droxy-eth-yl)amino]-ethyl benzoate: crystal structure, Hirshfeld surface analysis and computational study.

作者信息

Tan Sang Loon, Tiekink Edward R T

机构信息

Research Centre for Crystalline Materials, School of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia.

出版信息

Acta Crystallogr E Crystallogr Commun. 2020 May 29;76(Pt 6):933-939. doi: 10.1107/S2056989020006829. eCollection 2020 Jun 1.

DOI:10.1107/S2056989020006829
PMID:32523767
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7274010/
Abstract

The title di-substituted thio-urea, CHNOS, has the hy-droxy-lethyl and ethyl benzoate substituents bound to the same amine-N atom, and is twisted, having a (+)syn-clinal conformation with the N-C-C-O torsion angles of 49.39 (13) and 59.09 (12)°, respectively; the dihedral angle between the almost planar CNS core and the pendent benzene ring is 69.26 (4)°. In the crystal, supra-molecular layers propagating in the plane are formed a combination of hydroxyl-O-H⋯S(thione), amine-N-H⋯O(hydroxyl, carbon-yl) hydrogen-bonds. The layers stack along the axis with inter-digitation of the benzene rings allowing the formation of π-π stacking [inter-centroid separation = 3.8722 (7) Å] and parallel C=O⋯π inter-actions. A computational chemistry study shows the conventional hydrogen bonding in the crystal leads to significant electrostatic stabilization but dispersion terms are also apparent, notably through the inter-actions involving the benzene residue.

摘要

标题二取代硫脲CHNOS中,羟乙基和苯甲酸乙酯取代基连接在同一个胺氮原子上,呈扭曲状,具有(+)顺式构象,N-C-C-O扭转角分别为49.39 (13)°和59.09 (12)°;近乎平面的CNS核心与悬垂苯环之间的二面角为69.26 (4)°。在晶体中,由羟基-O-H⋯S(硫酮)、胺-N-H⋯O(羟基、羰基)氢键的组合形成了在平面内传播的超分子层。这些层沿着轴堆叠,苯环相互交错,从而形成π-π堆积[质心间距 = 3.8722 (7) Å]和平行的C=O⋯π相互作用。一项计算化学研究表明,晶体中的传统氢键导致了显著的静电稳定作用,但色散项也很明显,特别是通过涉及苯残基的相互作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/4c453b62ef56/e-76-00933-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/7f542a368636/e-76-00933-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/8188aeae535e/e-76-00933-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/414d7df64251/e-76-00933-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/4813b8111a4c/e-76-00933-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/23e9171d0e12/e-76-00933-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/6f8b9f1efde6/e-76-00933-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/8adf7c9e3995/e-76-00933-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/4c453b62ef56/e-76-00933-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/7f542a368636/e-76-00933-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/8188aeae535e/e-76-00933-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/414d7df64251/e-76-00933-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/4813b8111a4c/e-76-00933-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/23e9171d0e12/e-76-00933-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/6f8b9f1efde6/e-76-00933-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/8adf7c9e3995/e-76-00933-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7004/7274010/4c453b62ef56/e-76-00933-fig8.jpg

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本文引用的文献

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3,3-Bis(2-hy-droxy-eth-yl)-1-(4-methyl-benzoyl)thio-urea: crystal structure, Hirshfeld surface analysis and computational study.
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