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一种用于检测昆士兰果蝇(双翅目:实蝇科)的 LAMP 检测方法。

A LAMP assay for the detection of Bactrocera tryoni Queensland fruit fly (Diptera: Tephritidae).

机构信息

Agriculture Victoria Research, AgriBio, 5 Ring Road, Bundoora, Victoria, 3083, Australia.

School of Applied Systems Biology, La Trobe University, Bundoora, Victoria, 3083, Australia.

出版信息

Sci Rep. 2020 Jun 12;10(1):9554. doi: 10.1038/s41598-020-65715-5.

DOI:10.1038/s41598-020-65715-5
PMID:32533005
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7293347/
Abstract

LAMP assays are targeted molecular tests for the rapid detection of species in the laboratory and field. We developed a LAMP assay for an economically important fruit fly species, Queensland fruit fly, Bactrocera tryoni. This assay was assessed against a broad panel of target and non-target species and found to be specific, only amplifying the target species and closest relatives, in a portable real-time fluorometer (Genie III) in under 15 minutes with an anneal derivative temperature of 82.5 C. The assay is sensitive to low levels of target DNA (>0.016 ng/µl), performing equally to the existing qPCR test. To enable retention of a physical voucher specimen, for potential morphological confirmation of LAMP results, a novel whole-specimen non-destructive DNA extraction method was developed, suitable for LAMP in the field. The stability of DNA extraction and LAMP reagents was tested under simulated and actual field conditions and shown to be robust. Our new assay now provides a portable molecular tool for the detection of this significant tephritid fruit fly pest species of biosecurity/quarantine concern. This has already proven invaluable for in-field diagnostics, providing real-time support influencing immediate actions, with negative results allowing the release of fruit produce, and positive results initiating fruit fly control measures.

摘要

LAMP 检测法是一种针对实验室和野外物种快速检测的靶向分子检测方法。我们开发了一种针对经济上重要的果蝇物种——昆士兰果蝇(Bactrocera tryoni)的 LAMP 检测法。该检测法针对广泛的目标和非目标物种进行了评估,发现其具有特异性,仅在便携式实时荧光计(Genie III)中在 15 分钟内以 82.5°C 的退火衍生物温度扩增目标物种和最接近的亲缘物种。该检测法对低水平的目标 DNA(>0.016ng/µl)具有敏感性,与现有的 qPCR 检测法性能相当。为了能够保留物理凭证标本,以便对 LAMP 结果进行潜在的形态学确认,开发了一种新的整标本非破坏性 DNA 提取方法,适用于野外的 LAMP。在模拟和实际野外条件下测试了 DNA 提取和 LAMP 试剂的稳定性,结果表明其具有稳健性。我们的新检测法现在为检测这种具有重要生物安全/检疫意义的果实蝇害虫物种提供了一种便携式分子工具。这已经为现场诊断提供了宝贵的支持,实时提供支持以影响即时行动,阴性结果允许放行水果产品,阳性结果则启动果蝇控制措施。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3923/7293347/8fe50ea10b20/41598_2020_65715_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3923/7293347/e39d5469e2bb/41598_2020_65715_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3923/7293347/569df8b270f5/41598_2020_65715_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3923/7293347/ff4998c623f1/41598_2020_65715_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3923/7293347/cfd53e0525f0/41598_2020_65715_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3923/7293347/8110ac6cbf57/41598_2020_65715_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3923/7293347/8fe50ea10b20/41598_2020_65715_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3923/7293347/e39d5469e2bb/41598_2020_65715_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3923/7293347/569df8b270f5/41598_2020_65715_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3923/7293347/ff4998c623f1/41598_2020_65715_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3923/7293347/cfd53e0525f0/41598_2020_65715_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3923/7293347/8110ac6cbf57/41598_2020_65715_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3923/7293347/8fe50ea10b20/41598_2020_65715_Fig6_HTML.jpg

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