Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford OX1 3TA, UK.
Latvian Institute of Organic Synthesis, LV-1006 Riga, Latvia.
Biomolecules. 2020 Jun 12;10(6):899. doi: 10.3390/biom10060899.
Resistance to β-lactam antibacterials, importantly via production of β-lactamases, threatens their widespread use. Bicyclic boronates show promise as clinically useful, dual-action inhibitors of both serine- (SBL) and metallo- (MBL) β-lactamases. In combination with cefepime, the bicyclic boronate taniborbactam is in phase 3 clinical trials for treatment of complicated urinary tract infections. We report kinetic and crystallographic studies on the inhibition of AmpC, the class C β‑lactamase from , by bicyclic boronates, including taniborbactam, with different C-3 side chains. The combined studies reveal that an acylamino side chain is not essential for potent AmpC inhibition by active site binding bicyclic boronates. The tricyclic form of taniborbactam was observed bound to the surface of crystalline AmpC, but not at the active site, where the bicyclic form was observed. Structural comparisons reveal insights into why active site binding of a tricyclic form has been observed with the NDM-1 MBL, but not with other studied β-lactamases. Together with reported studies on the structural basis of inhibition of class A, B and D β‑lactamases, our data support the proposal that bicyclic boronates are broad-spectrum β‑lactamase inhibitors that work by mimicking a high energy 'tetrahedral' intermediate. These results suggest further SAR guided development could improve the breadth of clinically useful β-lactamase inhibition.
β-内酰胺类抗菌药物的耐药性,尤其是通过产生β-内酰胺酶,威胁到它们的广泛应用。双环硼酸酯类化合物有望成为临床上有用的、对丝氨酸(SBL)和金属(MBL)β-内酰胺酶均具有双重作用的抑制剂。双环硼酸酯他唑巴坦与头孢吡肟联合用于治疗复杂尿路感染的 3 期临床试验。我们报告了关于双环硼酸酯类化合物,包括他唑巴坦,对 AmpC(来自 的 C 类β-内酰胺酶)的抑制的动力学和晶体学研究,这些化合物具有不同的 C-3 侧链。综合研究表明,酰氨基侧链对于通过活性位点结合双环硼酸酯类化合物发挥强效 AmpC 抑制作用并非必需。观察到三环形式的他唑巴坦结合在结晶 AmpC 的表面,但不在活性位点,在活性位点观察到双环形式。结构比较揭示了为什么三环形式的活性位点结合已在 NDM-1 MBL 中观察到,而在其他研究的β-内酰胺酶中未观察到的原因。结合对 A、B 和 D 类β-内酰胺酶抑制结构基础的报道研究,我们的数据支持这样的观点,即双环硼酸酯类化合物是广谱β-内酰胺酶抑制剂,通过模拟高能“四面体形”中间体发挥作用。这些结果表明,进一步的 SAR 指导开发可以提高临床上有用的β-内酰胺酶抑制的广度。