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伊朗西南部一家医院临床分离株的基因分型与分子特征分析

Genotyping and molecular characterization of clinical isolates from a single hospital in Southwestern Iran.

作者信息

Farajzadeh Sheikh Ahmad, Savari Mohammad, Abbasi Montazeri Effat, Khoshnood Saeed

机构信息

Infectious and Tropical Diseases Research Center, Health Research Institute, Ahvaz Jundishapur University of Medical Sciences , Ahvaz, Iran.

Department of Microbiology, School of Medicine, Ahvaz Jundishapur University of Medical Sciences , Ahvaz, Iran.

出版信息

Pathog Glob Health. 2020 Jul;114(5):251-261. doi: 10.1080/20477724.2020.1765124. Epub 2020 Jun 19.

Abstract

() is a pathogen responsible for nosocomial infections among the hospitalized patients. The aim of this study was to investigate genotyping and molecular characterization and to examine the biofilm formation ability of isolates. In total, 70 isolates were collected from patients admitted to Imam Khomeini Hospital in Ahvaz, Southwestern Iran. Minimum inhibitory concentrations (MIC) test was performed using Vitek 2 system. The presence of genes encoding metallo-β-lactamases, oxacillinases, and integrase and the biofilm formation ability were then evaluated. Multiple locus variable-number tandem repeat (VNTR) analysis (MLVA) typing and multiplex PCR were performed to determine the genetic relationships. The bla-like gene had the highest prevalence. The frequency of genes encoding , , and among MDR isolates were 12 (17.1%), 18 (25.7%), and 22 (31.4%), respectively. Moreover, 46 isolates (75.4%) harbored class I integron and 10 isolates (16.39%) carried class II integron. The number of weak, moderate and strong biofilm-producing isolates were 3 (4.3%), 7 (10%), and 55 (78.5%), respectively. The results showed that 70 isolates were grouped into 12 distinct MLVA types with five clusters and four singleton genotypes. In addition, 25 (35.7%) isolates were assigned to international clone (IC) variants, 37 (52.8%) isolates belonged to group 1 (IC II), and 8  (11.4%) isolates belonged to group 2 (IC I). Our findings revealed that the population structure of the isolates was genetically diverse. More focus on genetic variation and antibiotic resistance of isolates are recommended.

摘要

()是导致住院患者医院感染的病原体。本研究的目的是调查基因分型和分子特征,并检测分离株的生物膜形成能力。总共从伊朗西南部阿瓦士的伊玛目霍梅尼医院收治的患者中收集了70株分离株。使用Vitek 2系统进行最低抑菌浓度(MIC)测试。然后评估编码金属β-内酰胺酶、苯唑西林酶和整合酶的基因的存在情况以及生物膜形成能力。进行多位点可变数目串联重复序列(VNTR)分析(MLVA)分型和多重PCR以确定遗传关系。bla样基因的流行率最高。耐多药分离株中编码、和的基因频率分别为12(17.1%)、18(25.7%)和22(31.4%)。此外,46株分离株(75.4%)携带I类整合子,10株分离株(16.39%)携带II类整合子。产生弱、中和强生物膜的分离株数量分别为3(4.3%)、7(10%)和55(78.5%)。结果表明,70株分离株被分为12种不同的MLVA类型,有5个簇和4个单倍型基因型。此外,25株(35.7%)分离株被归类为国际克隆(IC)变体,37株(52.8%)分离株属于第1组(IC II),8株(11.4%)分离株属于第2组(IC I)。我们的研究结果表明,分离株的群体结构在遗传上是多样的。建议更多地关注分离株的遗传变异和抗生素耐药性。

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