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[慢性淋巴细胞白血病患者中miR-181b的表达水平及靶基因预测]

[Expression Level and Target Gene Prediction of miR-181b in Patients with Chronic Lymphocytic Leukemia].

作者信息

Kou Zhen, Liu Hong, Wang Yi-Chun, Huang Qin, Wang Zeng-Sheng, Gu Zai-Li Nu Er, Lang Tao, Nie Yu-Ling, An Li, A Zi-Gu Li, Mu He-Ta Bai Er, Zhang Xiao-Yan, Fu Ling, Ai He-Mai Jiang, Mao Min, Wang Xiao-Min, Li Yan

机构信息

Medical College of Shihezi University, Shihezi 832001, Xinjiang Uygur Autonomous Region,China.

Department of Hematology, The People's Hospital of Xinjiang Uygur Autonomous Region, Urumqi 830001, Xinjiang Uygur Autonomous Region, China.

出版信息

Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2020 Jun;28(3):808-814. doi: 10.19746/j.cnki.issn.1009-2137.2020.03.015.

DOI:10.19746/j.cnki.issn.1009-2137.2020.03.015
PMID:32552940
Abstract

OBJECTIVE

To investigate the expression level of miR-181b in CD19+ B lymphocytes of patients with chronic lymphocytic leukemia (CLL), to analyze the relationship between its expression and the prognosis of CLL patients, and to predict the potential target gene of miR-181b in CLL by using bioinformatics.

METHODS

Eight-four patients with CLL treated in People's Hospital of Xinjiang Uygur Autonomous Region from June 2013 to June 2018 were selected. and 20 healthy people were selected as control group. RNA was extracted from CD19+B lymphocytes of peripheral blood by magnetic bead sorting, the expression level of miR-181b was detected, and it's expression differences in different IPI groups were analyzed. The correlation between the expression level of miR-181b and PFS of CLL patients also was analyzed. miR-181b target genes were predicted by online database and literatures, and gene annotation analysis and relevant signal pathway analysis were performed for candidate target genes.

RESULTS

The expression level of miR-181b in CLL patients was significantly lower than that in control group (P<0.01); The expression level of miR-181b in the low-risk group was higher than that in high-risk group and extremely high-risk group (P<0.05), but there was no statistical difference between low-risk group and medium-risk group (P=1.00). The expression level of miR-181b in medium-risk group was higher than that in high-risk group and extremely high-risk group (P<0.05), but there was no difference between high-risk group and extremely high-risk group (P=1.00). ROC curve results showed that the area under the curve (AUC) was 0.792 (P<0.01).When the expression level of miR-181b was at the threshold value of 0.279, it showed a better sensitivity (62.9%) and specificity (91.8%). Survival analysis results suggested that compared with the high expression group, the miR-181b low expression group had poor PFS (log rank: P=0.047). Prediction of miR-181b by using the starBase, targetscan and picTar database and its combination with literature reports indicated that CARD11, ZFP36L1, RUNX1, NR4A3, ATP1B1, PUM1 and PLAG1 related with blood diseases, and up-regulated CARD11 and ZFP36L1 participated in lymphoid tumor formation by promoting cell proliferation and inhibiting cell aging.

CONCLUSION

The expression level of miR-181b in CLL group are significantly lower than that in the controls group, and the low expression of miR-181b relates with poor prognosis of CLL patients. Through bioinformatics prediction and combined with literature reports, it is speculated that CARD11 and ZFP36L1 as target genes of miR-181b may be participated in the occurrence and development of CLL. Further experiments are needed to verify this result.

摘要

目的

探讨慢性淋巴细胞白血病(CLL)患者CD19⁺B淋巴细胞中miR-181b的表达水平,分析其表达与CLL患者预后的关系,并通过生物信息学方法预测miR-181b在CLL中的潜在靶基因。

方法

选取2013年6月至2018年6月在新疆维吾尔自治区人民医院治疗的84例CLL患者,并选取20例健康人作为对照组。采用磁珠分选法从外周血CD19⁺B淋巴细胞中提取RNA,检测miR-181b的表达水平,并分析其在不同国际预后指数(IPI)组中的表达差异。同时分析miR-181b表达水平与CLL患者无进展生存期(PFS)的相关性。通过在线数据库和文献预测miR-181b的靶基因,并对候选靶基因进行基因注释分析和相关信号通路分析。

结果

CLL患者miR-181b的表达水平显著低于对照组(P<0.01);低危组miR-181b的表达水平高于高危组和极高危组(P<0.05),但低危组与中危组之间无统计学差异(P = 1.00)。中危组miR-181b的表达水平高于高危组和极高危组(P<0.05),但高危组与极高危组之间无差异(P = 1.00)。ROC曲线结果显示,曲线下面积(AUC)为0.792(P<0.01)。当miR-181b表达水平阈值为0.279时,其敏感性为62.9%,特异性为91.8%。生存分析结果表明,与高表达组相比,miR-181b低表达组的PFS较差(对数秩检验:P = 0.047)。利用starBase、targetscan和picTar数据库对miR-181b进行预测,并结合文献报道表明,CARD11、ZFP36L1、RUNX1、NR4A3、ATP1B1、PUM1和PLAG1与血液疾病相关,上调的CARD11和ZFP36L1通过促进细胞增殖和抑制细胞衰老参与淋巴肿瘤形成。

结论

CLL组miR-181b的表达水平显著低于对照组,miR-181b低表达与CLL患者预后不良有关。通过生物信息学预测并结合文献报道推测,CARD11和ZFP36L1作为miR-181b的靶基因可能参与了CLL的发生发展。需要进一步实验验证该结果。

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