Li Xue-Gong, Zhang Wei-Jia, Qi Xiao-Qing, Wu Long-Fei
Laboratory of Deep-Sea microbial cell biology, Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences, China; France-China Joint Laboratory for Evolution and Development of Magnetotactic Multicellular Organisms (LIA-MagMC), Marseille, France, IDSSE-CAS, Sanya, China; Laboratory for Experimental Study under Deep-sea Extreme Conditions, Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences, China.
Laboratory of Deep-Sea microbial cell biology, Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences, China; France-China Joint Laboratory for Evolution and Development of Magnetotactic Multicellular Organisms (LIA-MagMC), Marseille, France, IDSSE-CAS, Sanya, China; Laboratory for Experimental Study under Deep-sea Extreme Conditions, Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences, China.
Mar Genomics. 2020 Aug;52:100733. doi: 10.1016/j.margen.2019.100733. Epub 2019 Nov 27.
Crassaminicella sp. strain SY095 is an anaerobic mesophilic marine bacterium that was recently isolated from a deep-sea hydrothermal vent on the Southwest Indian Ridge. Here, we present the complete genome sequence of strain SY095. The genome consists of a chromosome of 3,046,753 bp (G + C content of 30.81%) and a plasmid of 36,627 bp (G + C content of 31.29%), encodes 2966 protein, 135 tRNA genes, and 34 rRNA genes. Numerous genes are related to peptide transport, amino acid metabolism, motility, and sporulation. This agrees with the observation that strain SY095 is a spore-forming, motile, and chemoheterotrophic bacterium. Further, the genome harbors multiple prophages that carry all the genes necessary for viral particle synthesis. Some prophages carry additional genes that may be involved in the regulation of sporulation. This is the first reported genome of a bacterium from the genus Crassaminicella, providing insights into the microbial adaptation strategies to the deep-sea hydrothermal vent environment.
克氏氨基菌属菌株SY095是一种厌氧嗜温海洋细菌,最近从西南印度洋海岭的深海热液喷口分离得到。在此,我们展示了菌株SY095的完整基因组序列。该基因组由一条3,046,753 bp的染色体(G + C含量为30.81%)和一条36,627 bp的质粒(G + C含量为31.29%)组成,编码2966个蛋白质、135个tRNA基因和34个rRNA基因。许多基因与肽转运、氨基酸代谢、运动性和孢子形成有关。这与菌株SY095是一种形成孢子、具有运动性且为化能异养细菌的观察结果一致。此外,该基因组含有多个原噬菌体,这些原噬菌体携带病毒颗粒合成所需的所有基因。一些原噬菌体携带可能参与孢子形成调控的额外基因。这是首次报道的克氏氨基菌属细菌的基因组,为深入了解微生物对深海热液喷口环境的适应策略提供了见解。