随着年龄的增长,基因表达和蛋白质合成的多方面失调。
Multifaceted deregulation of gene expression and protein synthesis with age.
机构信息
Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119234, Russia.
Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115.
出版信息
Proc Natl Acad Sci U S A. 2020 Jul 7;117(27):15581-15590. doi: 10.1073/pnas.2001788117. Epub 2020 Jun 23.
Protein synthesis represents a major metabolic activity of the cell. However, how it is affected by aging and how this in turn impacts cell function remains largely unexplored. To address this question, herein we characterized age-related changes in both the transcriptome and translatome of mouse tissues over the entire life span. We showed that the transcriptome changes govern those in the translatome and are associated with altered expression of genes involved in inflammation, extracellular matrix, and lipid metabolism. We also identified genes that may serve as candidate biomarkers of aging. At the translational level, we uncovered sustained down-regulation of a set of 5'-terminal oligopyrimidine (5'-TOP) transcripts encoding protein synthesis and ribosome biogenesis machinery and regulated by the mTOR pathway. For many of them, ribosome occupancy dropped twofold or even more. Moreover, with age, ribosome coverage gradually decreased in the vicinity of start codons and increased near stop codons, revealing complex age-related changes in the translation process. Taken together, our results reveal systematic and multidimensional deregulation of protein synthesis, showing how this major cellular process declines with age.
蛋白质合成是细胞的主要代谢活动之一。然而,其如何受到衰老的影响,以及这反过来如何影响细胞功能,在很大程度上仍未得到探索。为了解决这个问题,我们在这里描述了整个生命周期中小鼠组织中转录组和翻译组与年龄相关的变化。我们表明,转录组的变化控制了翻译组的变化,并与参与炎症、细胞外基质和脂质代谢的基因表达的改变有关。我们还鉴定了可能作为衰老候选生物标志物的基因。在翻译水平上,我们发现了一组编码蛋白质合成和核糖体生物发生机制的 5'端寡嘧啶(5'-TOP)转录本的持续下调,这些转录本受 mTOR 途径调控。对于其中许多转录本,核糖体占据率降低了两倍甚至更多。此外,随着年龄的增长,核糖体在起始密码子附近的覆盖度逐渐降低,在终止密码子附近的覆盖度逐渐增加,这揭示了翻译过程中复杂的与年龄相关的变化。总之,我们的研究结果揭示了蛋白质合成的系统和多维失调,展示了这一主要细胞过程如何随年龄的增长而下降。
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