School of Physics and Electronic Science, Guizhou Normal University, Guiyang, 550025, China.
School of Physics and Astronomy, Sun Yat-Sen University, Zhuhai, 519082, China.
J Biol Phys. 2020 Jun;46(2):223-231. doi: 10.1007/s10867-020-09550-9. Epub 2020 Jul 1.
Current works focus on detecting macromolecule crowding effects on the phase separation of the mixture between semi-flexible polymer and crowders (hydrophilic polymers) in confined space by Monte Carlo simulations. With the increasing addition of crowders into the spherical confined space, the semi-flexible polymer was first compressed into a condensed state from the initial coil state, and then the condensed conformation expanded and deposited on the inner surface of the spherical confined space with an extended state. The phase diagram in the phase space of the volume fraction of crowders and the scaled radius of spherical confined space by crowder diameter, and the direct conformation transition of semi-flexible polymer have validated the phase transition process successfully. In addition, the deposition of extended conformation on the inner surface of the spherical confined space was qualified by the vertex density, its curve shifted along the radial direction with the increasing volume fraction of crowder. During the phase separation process, the critical volume fraction φ relates to the crowder diameter approximately linearly and the relation between the critical volume fraction and the crowder diameter strongly depends on the size of the spherical confined space.
目前的工作主要集中在通过蒙特卡罗模拟检测大分子拥挤效应对受限空间中半柔性聚合物和拥挤剂(亲水分子聚合物)混合物相分离的影响。随着拥挤剂逐渐加入到球形受限空间中,半柔性聚合物首先从初始的卷曲状态被压缩成凝聚态,然后在扩展状态下,凝聚构象在球形受限空间的内表面上扩展和沉积。相图展示了在拥挤剂的体积分数和以拥挤剂直径为标度的球形受限空间半径的相空间中,以及半柔性聚合物的直接构象转变,成功验证了相转变过程。此外,扩展构象在球形受限空间内表面上的沉积可以通过顶点密度来定性,其曲线随着拥挤剂体积分数的增加沿着径向方向移动。在相分离过程中,临界体积分数φ与拥挤剂直径大致呈线性关系,而临界体积分数与拥挤剂直径之间的关系强烈依赖于球形受限空间的大小。