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同源 14 缺失自身细菌素合成的菌株的代谢转变,通过转录组分析揭示。

Metabolic Shift of an Isogenic Strain of 14, Deficient in Its Own Bacteriocin Synthesis, as Revealed by a Transcriptomic Analysis.

机构信息

UMR Transfrontalière BioEcoAgro N° 1158, Univ. Lille, INRAE, Univ. Liège, UPJV, YNCREA, Univ. Artois, Univ. Littoral Côte d'Opale, ICV-Institut Charles Viollette, F-59000 Lille, France.

出版信息

Int J Mol Sci. 2020 Jun 30;21(13):4653. doi: 10.3390/ijms21134653.

DOI:10.3390/ijms21134653
PMID:32629918
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7369866/
Abstract

The production of antimicrobial molecules often involves complex biological pathways. This study aimed at understanding the metabolic and physiological networks of enterocin EntDD14-associated function, in the bacteriocinogenic strain, 14. A global and comparative transcriptomic study was carried out on 14 and its isogenic mutant Δ, inactivated in genes coding for EntDD14. The in vitro ability to form biofilm on polystyrene plates was assessed by the crystal violet method, while the cytotoxicity on human colorectal adenocarcinoma Caco-2 cells was determined by the Cell Counting Kit-8. Transcriptomic data revealed that 71 genes were differentially expressed in both strains. As expected, genes coding for EntDD14 were downregulated in the Δ mutant, whereas the other 69 genes were upregulated. Upregulated genes were associated with phage-related chromosomal islands, biofilm formation capability, resistance to environmental stresses, and metabolic reprogramming. Interestingly, the Δ mutant showed an improved bacterial growth, a high capacity to form biofilm on inanimate surfaces and a very weak cytotoxicity level. These multiple metabolic rearrangements delineate a new line of defense to counterbalance the loss of EntDD14.

摘要

抗菌分子的产生通常涉及复杂的生物途径。本研究旨在了解细菌素产生菌株 14 中肠菌素 EntDD14 相关功能的代谢和生理网络。对 14 及其基因编码 EntDD14 失活的同源突变体 Δ 进行了全局和比较转录组学研究。通过结晶紫法评估在聚苯乙烯平板上形成生物膜的体外能力,通过细胞计数试剂盒-8 测定对人结直肠腺癌细胞 Caco-2 的细胞毒性。转录组数据显示,两株菌中共有 71 个基因差异表达。不出所料,Δ 突变体中编码 EntDD14 的基因下调,而其他 69 个基因上调。上调的基因与噬菌体相关的染色体岛、生物膜形成能力、对环境胁迫的抗性和代谢重编程有关。有趣的是,Δ 突变体表现出更好的细菌生长、在无生命表面形成生物膜的高能力和非常低的细胞毒性水平。这些多种代谢重排勾勒出了一条新的防御线,以平衡 EntDD14 的缺失。

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