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细胞分裂蛋白 divIVA 在粪肠球菌发病机制、生物膜和耐药性中的作用:通过计算机模拟方法的未来展望。

Role of cell division protein divIVA in Enterococcus faecalis pathogenesis, biofilm and drug resistance: A future perspective by in silico approaches.

机构信息

Medical Microbiology and Molecular Biology Laboratory, Interdisciplinary Biotechnology Unit, Aligarh Muslim University, Aligarh, 202002, India.

Medical Microbiology and Molecular Biology Laboratory, Interdisciplinary Biotechnology Unit, Aligarh Muslim University, Aligarh, 202002, India.

出版信息

Microb Pathog. 2018 Dec;125:361-365. doi: 10.1016/j.micpath.2018.10.001. Epub 2018 Oct 2.

DOI:10.1016/j.micpath.2018.10.001
PMID:30290265
Abstract

Antibiotics resistance is the major problem in clinical settings which leads to the emergence of drug resistant bacteria. Biofilm formation is one of the grounds for the emergence of antibiotics resistant strains of Enterococcus faecalis. Our group previously reported in a comparative proteomic study of biofilm and planktonic state of E. faecalis that cell division protein divIVA was two folds overexpressed in biofilm state as compared to planktonic one and suggested its involvement in biofilm formation and antibiotics resistance. In this in silico study molecular docking showed that DNA bind to the conserved amino acid residues of divIVA domain and suggested that divIVA possibly secretes DNA into extra polymeric substance (EPS) which is the part of biofilm. We also performed the STRING analysis of cell division protein divIVA and predicted their interactive partners {cell division proteins/divisome complex (ftsZ, ftsA, divIV, ftsL, & gpsB), hypothetical proteins (sepF, EF_0261, EF_1000, EF_0998, EF_1006 & EF_1040), isoleucyl-tRNA synthetase (ileS), septation ring formation regulator (ezrA), S4 domain-containing protein (EF_1001), rod shape-determining protein (mreC), UDP-N-acetylmuramoyl-L-alanyl-d-glutamate synthetase (murD), UDP-diphospho-muramoyl-pentapeptide beta-N- acetylglucosaminyltransferase (murG), Lipoprotein signal peptidase (lspA), adenylate kinase (adk) and DNA-binding response regulator (vicR)}. We suggest that cumulatively divIVA and its interactive partners might be directly or indirectly involved in E. faecalis cell division, growth, biofilm formation, virulence and resistance.

摘要

抗生素耐药性是临床环境中的主要问题,导致耐药细菌的出现。生物膜形成是粪肠球菌产生抗生素耐药株的原因之一。我们的研究小组之前在粪肠球菌生物膜和浮游状态的比较蛋白质组学研究中报告,与浮游状态相比,细胞分裂蛋白 divIVA 在生物膜状态下表达上调了两倍,并表明其参与了生物膜形成和抗生素耐药性。在这项计算机模拟研究中,分子对接表明 DNA 与 divIVA 结构域的保守氨基酸残基结合,并表明 divIVA 可能将 DNA 分泌到胞外多聚物(EPS)中,EPS 是生物膜的一部分。我们还对细胞分裂蛋白 divIVA 进行了 STRING 分析,并预测了它们的相互作用伙伴{细胞分裂蛋白/分裂体复合物(ftsZ、ftsA、divIV、ftsL 和 gpsB)、假定蛋白(sepF、EF_0261、EF_1000、EF_0998、EF_1006 和 EF_1040)、异亮氨酸-tRNA 合成酶(ileS)、分隔环形成调节剂(ezrA)、S4 结构域含蛋白(EF_1001)、棒状决定蛋白(mreC)、UDP-N-乙酰胞壁酰-L-丙氨酰-D-谷氨酸合成酶(murD)、UDP-二磷酸-muramoyl-五肽β-N-乙酰葡萄糖胺基转移酶(murG)、脂蛋白信号肽酶(lspA)、腺苷酸激酶(adk)和 DNA 结合反应调节剂(vicR)}。我们认为,divIVA 及其相互作用伙伴可能直接或间接地参与粪肠球菌的细胞分裂、生长、生物膜形成、毒力和耐药性。

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