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嗜热细菌生产2,3-丁二醇的基因组规模代谢模型

A Genome-Scale Metabolic Model of 2,3-Butanediol Production by Thermophilic Bacteria .

作者信息

Kulyashov Mikhail, Peltek Sergey E, Akberdin Ilya R

机构信息

Biosoft.ru, 630058 Novosibirsk, Russia.

Department of Natural Sciences, Novosibirsk State University, 630090 Novosibirsk, Russia.

出版信息

Microorganisms. 2020 Jul 4;8(7):1002. doi: 10.3390/microorganisms8071002.

Abstract

The thermophilic strain of the genus , is a promising bacterial chassis for a wide range of biotechnological applications. In this study, we explored the metabolic potential of for the production of 2,3-butanediol (2,3-BTD), one of the cost-effective commodity chemicals. Here we present a genome-scale metabolic model for constructed using an auto-generating pipeline with consequent thorough manual curation. The model contains 1321 genes and includes 1676 reactions and 1589 metabolites, representing the most-complete and publicly available model of the genus . The developed model provides new insights into thermophilic bacterial metabolism and highlights new strategies for biotechnological applications of the strain. Our analysis suggests that has a potential for 2,3-butanediol production from a variety of utilized carbon sources, including glycerine, a common byproduct of biofuel production. We identified a set of solutions for enhancing 2,3-BTD production, including cultivation under anaerobic or microaerophilic conditions and decreasing the TCA flux to succinate via reducing citrate synthase activity. Both in silico predicted metabolic alternatives have been previously experimentally verified for closely related strains including the genus

摘要

属的嗜热菌株是一种有前途的细菌底盘,可用于广泛的生物技术应用。在本研究中,我们探索了该菌株生产2,3-丁二醇(2,3-BTD)的代谢潜力,2,3-丁二醇是一种具有成本效益的商品化学品。在此,我们展示了一个使用自动生成管道并经过全面人工整理构建的该菌株的基因组规模代谢模型。该模型包含1321个基因,包括1676个反应和1589个代谢物,代表了属中最完整且公开可用的模型。所开发的模型为嗜热细菌代谢提供了新的见解,并突出了该菌株生物技术应用的新策略。我们的分析表明,该菌株有潜力从多种利用的碳源生产2,3-丁二醇,包括生物燃料生产的常见副产物甘油。我们确定了一组提高2,3-BTD产量的解决方案,包括在厌氧或微需氧条件下培养,以及通过降低柠檬酸合酶活性减少三羧酸循环向琥珀酸的通量。先前已通过实验验证了包括属在内的密切相关菌株的计算机预测代谢替代方案。

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