Vilas J L, Oton J, Messaoudi C, Melero R, Conesa P, Ramirez-Aportela E, Mota J, Martinez M, Jimenez A, Marabini R, Carazo J M, Vargas J, Sorzano C O S
Biocomputing Unit, Centro Nacional de Biotecnologia (CNB-CSIC), Darwin, 3, Campus Universidad Autonoma, 28049 Cantoblanco, Madrid, Spain.
MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.
J Struct Biol X. 2019 Nov 25;4:100016. doi: 10.1016/j.yjsbx.2019.100016. eCollection 2020.
Resolution (global and local) is one of the most reported metrics of quality measurement in Single Particle Analysis (SPA). However, in electron tomography, the situation is different and its computation is not straightforward. Typically, resolution estimation is global and, therefore, reduces the assessment of a whole tomogram to a single number. However, it is known that tomogram quality is spatially variant. Still, up to our knowledge, a method to estimate local quality metrics in tomography is lacking. This work introduces , a method developed to estimate locally in a tomogram the highest reliable frequency component, expressed as a form of local resolution. The fundamentals lie in a local analysis of the density map via monogenic signals, which, in analogy to , allows for local estimations. Results with experimental data show that the local resolution range that MonoTomo casts agrees with reported resolution values for experimental data sets, with the advantage of providing a local estimation. A range of applications of are suggested for further exploration.
分辨率(全局和局部)是单颗粒分析(SPA)中最常被报道的质量测量指标之一。然而,在电子断层扫描中,情况有所不同,其计算并不简单。通常,分辨率估计是全局的,因此将整个断层图像的评估简化为一个单一数字。然而,众所周知,断层图像质量在空间上是变化的。尽管如此,据我们所知,目前缺乏一种在断层扫描中估计局部质量指标的方法。这项工作介绍了一种方法,该方法旨在在断层图像中局部估计最高可靠频率分量,以局部分辨率的形式表示。其基本原理在于通过单基因信号对密度图进行局部分析,这类似于允许进行局部估计。实验数据结果表明,MonoTomo计算出的局部分辨率范围与实验数据集报道的分辨率值相符,其优势在于能够提供局部估计。还提出了一系列MonoTomo的应用以供进一步探索。