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渗透剂对盐胁迫下海洋盐单胞菌 CKY01 抗性的影响及通过基因组测序鉴定渗透剂相关基因。

Effects of osmolytes on salt resistance of Halomonas socia CKY01 and identification of osmolytes-related genes by genome sequencing.

机构信息

Department of Biological Engineering, College of Engineering, Konkuk University, 1 Hwayang-dong, Gwangjin-gu, Seoul 143-701, South Korea.

Department of Biological Engineering, College of Engineering, Konkuk University, 1 Hwayang-dong, Gwangjin-gu, Seoul 143-701, South Korea; Institute for Ubiquitous Information Technology and Applications, Konkuk University, Seoul 143-701, South Korea.

出版信息

J Biotechnol. 2020 Oct 10;322:21-28. doi: 10.1016/j.jbiotec.2020.07.006. Epub 2020 Jul 10.

Abstract

Bacteria from the genus Halomonas hold promise in biotechnology as sources of salt-tolerant enzymes, biosurfactants, biopolymers, osmolytes, and as actors in bioremediation processes. In a previous work, we have identified Halomonas socia strain CKY01 having various hydrolase activities. Here, we aimed to study the survival strategies of marine bacteria. A deep genome sequencing study of H. socia CKY01 has revealed 4627 genes reaching 4,753,299 bp with 64 % of GC content. This strain produced polyhydroxybutyrate (PHB) having one gene clusters having phaC and phasin, and it has several genes responsible for the uptake, synthesis, and transport of the osmolytes such as betaine, choline, ectoine, carnitine, and proline in the bacterial genome. The addition of 60 mM glutamate, 60 mM proline and 60 mM ectoine enhanced growth 300.8 %, 294.2 % and 235.0 %, respectively, under 10 % saline conditions. In particular, ectoine and proline increased salt resistance and allowed cells to survive in more than 15 % NaCl. By combining experimental and genome sequencing data, we have investigated the importance of osmolytes on the survival of this Halomonas strain.

摘要

海洋盐单胞菌属的细菌作为耐盐酶、生物表面活性剂、生物聚合物、渗透剂和生物修复过程中的作用因子,在生物技术中有很大的应用前景。在之前的研究中,我们已经鉴定出具有各种水解酶活性的盐单胞菌属社会株 CKY01。在这里,我们旨在研究海洋细菌的生存策略。对海洋盐单胞菌 CKY01 的深度基因组测序研究揭示了 4627 个基因,达到 4753299bp,GC 含量为 64%。该菌株产生聚羟基丁酸酯(PHB),具有一个基因簇,包含 phaC 和 phasin,并且在细菌基因组中存在几个负责吸收、合成和运输渗透剂(如甜菜碱、胆碱、海藻糖、肉碱和脯氨酸)的基因。在 10%盐度条件下,添加 60mM 谷氨酸、60mM 脯氨酸和 60mM 海藻糖分别使生长增强 300.8%、294.2%和 235.0%。特别是,海藻糖和脯氨酸增加了盐的耐受性,使细胞能够在超过 15%的 NaCl 中存活。通过结合实验和基因组测序数据,我们研究了渗透剂对这种盐单胞菌生存的重要性。

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