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利用大型基因组数据集阐明自闭症谱系障碍的病理生物学。

Leveraging large genomic datasets to illuminate the pathobiology of autism spectrum disorders.

作者信息

Searles Quick Veronica B, Wang Belinda, State Matthew W

机构信息

Department of Psychiatry and Behavioral Sciences, UCSF Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, 94143, USA.

出版信息

Neuropsychopharmacology. 2021 Jan;46(1):55-69. doi: 10.1038/s41386-020-0768-y. Epub 2020 Jul 15.

DOI:10.1038/s41386-020-0768-y
PMID:32668441
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7688655/
Abstract

"Big data" approaches in the form of large-scale human genomic studies have led to striking advances in autism spectrum disorder (ASD) genetics. Similar to many other psychiatric syndromes, advances in genotyping technology, allowing for inexpensive genome-wide assays, has confirmed the contribution of polygenic inheritance involving common alleles of small effect, a handful of which have now been definitively identified. However, the past decade of gene discovery in ASD has been most notable for the application, in large family-based cohorts, of high-density microarray studies of submicroscopic chromosomal structure as well as high-throughput DNA sequencing-leading to the identification of an increasingly long list of risk regions and genes disrupted by rare, de novo germline mutations of large effect. This genomic architecture offers particular advantages for the illumination of biological mechanisms but also presents distinctive challenges. While the tremendous locus heterogeneity and functional pleiotropy associated with the more than 100 identified ASD-risk genes and regions is daunting, a growing armamentarium of comprehensive, large, foundational -omics databases, across species and capturing developmental trajectories, are increasingly contributing to a deeper understanding of ASD pathology.

摘要

大规模人类基因组研究形式的“大数据”方法已在自闭症谱系障碍(ASD)遗传学领域取得了显著进展。与许多其他精神疾病综合征类似,基因分型技术的进步使得全基因组检测成本降低,这证实了涉及小效应常见等位基因的多基因遗传的作用,其中一些现已被明确鉴定。然而,过去十年在ASD领域的基因发现最为显著的是,在基于大家庭的队列中应用了亚微观染色体结构的高密度微阵列研究以及高通量DNA测序,从而识别出越来越多因罕见的、具有大效应的新生种系突变而破坏的风险区域和基因。这种基因组结构为阐明生物学机制提供了特殊优势,但也带来了独特挑战。虽然与100多个已确定的ASD风险基因和区域相关的巨大基因座异质性和功能多效性令人望而生畏,但越来越多跨物种且涵盖发育轨迹的全面、大型基础组学数据库正日益有助于更深入地理解ASD病理学。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bee/7688655/0d7145ae0015/41386_2020_768_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bee/7688655/31f34a5f768a/41386_2020_768_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bee/7688655/2121028590af/41386_2020_768_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bee/7688655/0fbfcfcf7071/41386_2020_768_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bee/7688655/0d7145ae0015/41386_2020_768_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bee/7688655/31f34a5f768a/41386_2020_768_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bee/7688655/2121028590af/41386_2020_768_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bee/7688655/0fbfcfcf7071/41386_2020_768_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bee/7688655/0d7145ae0015/41386_2020_768_Fig4_HTML.jpg

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