Renardy Marissa, Kirschner Denise
University of Michigan Medical School.
medRxiv. 2020 Jul 7:2020.07.06.20147223. doi: 10.1101/2020.07.06.20147223.
Marissa Renardy and Denise Kirschner University of Michigan Medical School The COVID-19 pandemic has highlighted the patchwork nature of disease epidemics, with infection spread dynamics varying wildly across countries and across states within the US. These heteroge- neous patterns are also observed within individual states, with patches of concentrated outbreaks. Data is being generated daily at all of these spatial scales, and answers to questions regarded re- opening strategies are desperately needed. Mathematical modeling is useful in exactly these cases, and using modeling at a county scale may be valuable to further predict disease dynamics for the purposes of public health interventions. To explore this issue, we study and predict the spread of COVID-19 in Washtenaw County, MI, the home to University of Michigan, Eastern Michigan University, and Google, as well as serving as a sister city to Detroit, MI where there has been a serious outbreak. Here, we apply a discrete and stochastic network-based modeling framework allowing us to track every individual in the county. In this framework, we construct contact net- works based on synthetic population datasets specific for Washtenaw County that are derived from US Census datasets. We assign individuals to households, workplaces, schools, and group quarters (such as prisons). In addition, we assign casual contacts to each individual at random. Using this framework, we explicitly simulate Michigan-specific government-mandated workplace and school closures as well as social distancing measures. We also perform sensitivity analyses to identify key model parameters and mechanisms contributing to the observed disease burden in the three months following the first observed cases on COVID-19 in Michigan. We then consider several scenarios for relaxing restrictions and reopening workplaces to predict what actions would be most prudent. In particular, we consider the effects of 1) different timings for reopening, and 2) different levels of workplace vs. casual contact re-engagement. Through simulations and sensitivity analyses, we explore mechanisms driving magnitude and timing of a second wave of infections upon re-opening. This model can be adapted to other US counties using synthetic population databases and data specific to those regions.
玛丽莎·雷纳尔迪和丹妮丝·基施纳 密歇根大学医学院 新冠疫情凸显了疾病流行情况的参差不齐,感染传播动态在美国各州乃至各个国家之间都存在极大差异。在各个州内部也能观察到这种异质性模式,存在局部集中爆发的情况。在所有这些空间尺度上,每天都在产生数据,而对于重新开放策略相关问题的答案却极为迫切地需要。数学建模在这些情况下非常有用,在县一级使用建模对于为公共卫生干预目的进一步预测疾病动态可能很有价值。为了探讨这个问题,我们研究并预测了密歇根州沃什特瑙县的新冠病毒传播情况,该县是密歇根大学、东密歇根大学和谷歌的所在地,同时也是密歇根州底特律的姐妹城市,底特律那里已经发生了严重疫情。在此,我们应用一个基于离散和随机网络的建模框架,使我们能够追踪该县的每一个人。在这个框架中,我们基于从美国人口普查数据集派生出来的、针对沃什特瑙县的合成人口数据集构建接触网络。我们将个体分配到家庭、工作场所、学校和集体宿舍(如监狱)。此外,我们随机为每个个体分配偶然接触对象。利用这个框架,我们明确模拟了密歇根州政府强制要求的工作场所和学校关闭以及社交距离措施。我们还进行敏感性分析,以确定在密歇根州首次观察到新冠病例后的三个月里,导致观察到的疾病负担的关键模型参数和机制。然后,我们考虑了几种放宽限制和重新开放工作场所的情景,以预测哪些行动最为审慎。特别是,我们考虑了1)重新开放的不同时间,以及2)工作场所与偶然接触重新参与的不同水平所产生的影响。通过模拟和敏感性分析,我们探索了重新开放时驱动第二波感染的规模和时间的机制。这个模型可以使用合成人口数据库和特定于那些地区的数据,适用于美国的其他县。