University of Michigan Medical School, United States.
University of Michigan School of Public Health, United States.
J Theor Biol. 2020 Dec 21;507:110461. doi: 10.1016/j.jtbi.2020.110461. Epub 2020 Aug 29.
The COVID-19 pandemic has highlighted the patchwork nature of disease epidemics, with infection spread dynamics varying wildly across countries and across states within the US. To explore this issue, we study and predict the spread of COVID-19 in Washtenaw County, MI, which is home to University of Michigan and Eastern Michigan University, and in close proximity to Detroit, MI, a major epicenter of the epidemic in Michigan. We apply a discrete and stochastic network-based modeling framework allowing us to track every individual in the county. In this framework, we construct contact networks based on synthetic population datasets specific for Washtenaw County that are derived from US Census datasets. We assign individuals to households, workplaces, schools, and group quarters (such as prisons or long term care facilities). In addition, we assign casual contacts to each individual at random. Using this framework, we explicitly simulate Michigan-specific government-mandated workplace and school closures as well as social distancing measures. We perform sensitivity analyses to identify key model parameters and mechanisms contributing to the observed disease burden in the three months following the first observed cases of COVID-19 in Michigan. We then consider several scenarios for relaxing restrictions and reopening workplaces to predict what actions would be most prudent. In particular, we consider the effects of 1) different timings for reopening, and 2) different levels of workplace vs. casual contact re-engagement. We find that delaying reopening does not reduce the magnitude of the second peak of cases, but only delays it. Reducing levels of casual contact, on the other hand, both delays and lowers the second peak. Through simulations and sensitivity analyses, we explore mechanisms driving the magnitude and timing of a second wave of infections upon re-opening. We find that the most significant factors are workplace and casual contacts and protective measures taken by infected individuals who have sought care. This model can be adapted to other US counties using synthetic population databases and data specific to those regions.
新冠疫情凸显了疾病流行的拼凑性质,感染传播动态在各国和美国各州之间差异巨大。为了探讨这个问题,我们研究并预测了密歇根州 Washtenaw 县的新冠疫情传播情况,该县拥有密歇根大学和东密歇根大学,并且与密歇根州疫情的主要中心底特律相邻。我们采用了离散和随机的基于网络的建模框架,可以追踪该县的每个个体。在这个框架中,我们根据特定于 Washtenaw 县的综合人口数据集构建接触网络,这些数据集源自美国人口普查数据集。我们将个人分配到家庭、工作场所、学校和集体宿舍(如监狱或长期护理设施)。此外,我们随机为每个个体分配偶然接触者。使用这个框架,我们明确模拟了密歇根州特定的政府强制关闭工作场所和学校以及社交距离措施。我们进行了敏感性分析,以确定导致在密歇根州首次发现新冠病例后的三个月内观察到的疾病负担的关键模型参数和机制。然后,我们考虑了几种放宽限制和重新开放工作场所的情景,以预测采取哪些措施最为谨慎。特别是,我们考虑了以下几种情况:1)不同的重新开放时间,以及 2)不同程度的工作场所与偶然接触的重新参与。我们发现,延迟重新开放并不会降低第二波病例的规模,而只是延迟了它。另一方面,减少偶然接触的程度既会延迟又会降低第二波高峰。通过模拟和敏感性分析,我们探讨了重新开放后感染第二波的规模和时间的驱动机制。我们发现,最重要的因素是工作场所和偶然接触以及已寻求治疗的感染者采取的保护措施。这个模型可以使用综合人口数据库和特定于这些地区的数据来适应美国其他县。