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相干反斯托克斯拉曼散射(CARS)高光谱成像中的实时高通量拉曼信号提取与处理

Real-time and high-throughput Raman signal extraction and processing in CARS hyperspectral imaging.

作者信息

Camp Charles H, Bender John S, Lee Young Jong

出版信息

Opt Express. 2020 Jul 6;28(14):20422-20437. doi: 10.1364/OE.397606.

DOI:10.1364/OE.397606
PMID:32680102
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9810127/
Abstract

We present a new collection of processing techniques, collectively "factorized Kramers-Kronig and error correction" (fKK-EC), for (a) Raman signal extraction, (b) denoising, and (c) phase- and scale-error correction in coherent anti-Stokes Raman scattering (CARS) hyperspectral imaging and spectroscopy. These new methods are orders-of-magnitude faster than conventional methods and are capable of real-time performance, owing to the unique core concept: performing all processing on a small basis vector set and using matrix/vector multiplication afterwards for direct and fast transformation of the entire dataset. Experimentally, we demonstrate that a 703026 spectra image of chicken cartilage can be processed in 70 s (≈ 0.1 ms / spectrum), which is ≈ 70 times faster than with the conventional workflow (≈7.0 ms / spectrum). Additionally, we discuss how this method may be used for machine learning (ML) by re-using the transformed basis vector sets with new data. Using this ML paradigm, the same tissue image was processed (post-training) in ≈ 33 s, which is a speed-up of ≈ 150 times when compared with the conventional workflow.

摘要

我们提出了一组新的处理技术,统称为“因式分解的克拉默斯-克勒尼希变换与误差校正”(fKK-EC),用于(a)拉曼信号提取、(b)去噪以及(c)相干反斯托克斯拉曼散射(CARS)高光谱成像和光谱中的相位和尺度误差校正。这些新方法比传统方法快几个数量级,并且能够实现实时性能,这得益于其独特的核心概念:在一个小的基向量集上执行所有处理,然后使用矩阵/向量乘法对整个数据集进行直接快速变换。在实验中,我们证明了一张包含703026个光谱的鸡软骨图像可以在70秒内处理完成(≈0.1毫秒/光谱),这比传统工作流程快约70倍(≈7.0毫秒/光谱)。此外,我们还讨论了如何通过将变换后的基向量集与新数据重新使用,将该方法用于机器学习(ML)。使用这种ML范式,同一组织图像在训练后处理时间约为33秒,与传统工作流程相比,速度提高了约150倍。

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J Raman Spectrosc. 2016 Apr;47(4):408-415. doi: 10.1002/jrs.4824. Epub 2015 Oct 5.
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Hyperspectral volumetric coherent anti-Stokes Raman scattering microscopy: quantitative volume determination and NaCl as non-resonant standard.高光谱体相干反斯托克斯拉曼散射显微镜:定量体积测定及以氯化钠作为非共振标准
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