Max Planck Institute for Marine Microbiology, Celsiusstr.1, 28359 Bremen, Germany.
Syst Appl Microbiol. 2020 Jul;43(4):126088. doi: 10.1016/j.syapm.2020.126088. Epub 2020 May 25.
Coastal phytoplankton blooms are frequently followed by successive blooms of heterotrophic bacterial clades. The class Flavobacteriia within the Bacteroidetes has been shown to play an important role in the degradation of high molecular weight substrates that become available in the later stages of such blooms. One of the flavobacterial clades repeatedly observed over the course of several years during phytoplankton blooms off the coast of Helgoland, North Sea, is Vis6. This genus-level clade belongs to the family Cryomorphaceae and has been resistant to cultivation to date. Based on metagenome assembled genomes, comparative 16S rRNA gene sequence analyses and fluorescence in situ hybridization, we here propose a novel candidate genus Abditibacter, comprising three novel species Candidatus Abditibacter vernus, Candidatus Abditibacter forsetii and Candidatus Abditibacter autumni. While the small genomes of the three novel photoheterotrophic species encode highly similar gene repertoires, including genes for degradation of proteins and algal storage polysaccharides such as laminarin, two of them - Ca. A. vernus and Ca. A. forsetii - seem to have a preference for spring blooms, while Ca. A. autumni almost exclusively occurs in late summer and autumn.
沿海浮游植物水华后,常伴随着异养细菌类群的连续水华。在浮游植物水华后期,可利用的高分子量底物的降解中,拟杆菌门的黄杆菌类群发挥了重要作用。在北海赫尔戈兰岛沿海浮游植物水华期间的几年中,反复观察到一个名为 Vis6 的黄杆菌类群。该属级类群属于 Cryomorphaceae 科,迄今为止一直难以培养。基于宏基因组组装基因组、比较 16S rRNA 基因序列分析和荧光原位杂交,我们在此提出了一个新的候选属 Abditibacter,包含三个新的种:Candidatus Abditibacter vernus、Candidatus Abditibacter forsetii 和 Candidatus Abditibacter autumni。虽然这三个新的光异养种的小基因组编码了高度相似的基因库,包括用于降解蛋白质和藻类储存多糖(如褐藻淀粉)的基因,但其中两个种——Ca. A. vernus 和 Ca. A. forsetii——似乎更喜欢春季水华,而 Ca. A. autumni 几乎只在夏末和秋季出现。