Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland.
Department of Mathematics, University of Fribourg, Fribourg, Switzerland.
Elife. 2020 Jul 28;9:e57915. doi: 10.7554/eLife.57915.
Conjugative transfer of the integrative and conjugative element ICE in requires development of a transfer competence state in stationary phase, which arises only in 3-5% of individual cells. The mechanisms controlling this bistable switch between non-active and transfer competent cells have long remained enigmatic. Using a variety of genetic tools and epistasis experiments in , we uncovered an 'upstream' cascade of three consecutive transcription factor-nodes, which controls transfer competence initiation. One of the uncovered transcription factors (named BisR) is representative for a new regulator family. Initiation activates a feedback loop, controlled by a second hitherto unrecognized heteromeric transcription factor named BisDC. Stochastic modelling and experimental data demonstrated the feedback loop to act as a scalable converter of unimodal (population-wide or 'analog') input to bistable (subpopulation-specific or 'digital') output. The feedback loop further enables prolonged production of BisDC, which ensures expression of the 'downstream' functions mediating ICE transfer competence in activated cells. Phylogenetic analyses showed that the ICE regulatory constellation with BisR and BisDC is widespread among and -proteobacteria, including various pathogenic strains, highlighting its evolutionary conservation and prime importance to control the behaviour of this wide family of conjugative elements.
在 中,整合和共轭元件 ICE 的共轭转移需要在静止期发展转移能力状态,而这种状态仅出现在 3-5%的个体细胞中。控制这种非活跃和具有转移能力细胞之间双稳态开关的机制长期以来一直是个谜。通过在 中使用各种遗传工具和上位实验,我们发现了一个连续的三个转录因子节点的“上游”级联,它控制着转移能力的起始。所揭示的转录因子之一(命名为 BisR)代表了一个新的调控因子家族。起始激活了一个由第二个迄今为止未被识别的异源二聚体转录因子 BisDC 控制的反馈回路。随机建模和实验数据表明,该反馈回路充当单峰(全种群或“模拟”)输入到双峰(亚种群特异性或“数字”)输出的可扩展转换器。该反馈回路进一步确保了 BisDC 的长期产生,BisDC 确保了在激活细胞中介导 ICE 转移能力的“下游”功能的表达。系统发育分析表明,具有 BisR 和 BisDC 的 ICE 调控结构在 和 -变形菌中广泛存在,包括各种致病性菌株,这突出了其进化保守性及其对控制这种广泛的共轭元件家族行为的重要性。