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新种和新种,从海洋环境中分离出的三价铁还原菌。

sp. nov. and sp. nov., Fe(III)-reducing bacteria isolated from marine environments.

机构信息

Department of Biological Sciences, Inha University, Incheon 22212, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2020 Sep;70(9):4927-4934. doi: 10.1099/ijsem.0.004359.

Abstract

Two Gram-stain-negative, Fe(III)-reducing, facultatively anaerobic, motile via a single polar flagellum, rod-shaped bacterial strains, designated IMCC35001 and IMCC35002, were isolated from tidal flat sediment and seawater, respectively. Results of 16S rRNA gene sequence analysis showed that IMCC35001 and IMCC35002 shared 96.6 % sequence similarity and were most closely related to FUT3661 (98.6 %) and Asr22-7 (96.8 %), respectively. Draft genome sequences of IMCC35001 and IMCC35002 revealed 4.0 and 4.8 Mbp of genome size with 61.0 and 51.8 mol% of DNA G+C content, respectively. Average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between the two strains were 73.1 and 19.8 %, respectively, indicating that they are separate species. The two genomes showed ≤84.4 % ANI and ≤27.8 % dDDH to other species of the genus , suggesting that the two strains each represent novel species. The two strains contained both menaquinone (MK-7) and ubiquinones (Q-7 and Q-8). Major fatty acids of strain IMCC35001 were iso-C, C 9, C 8 and C and those of strain IMCC35002 were C 9, C and summed feature 3 (C 7 and/or C 6). Major polar lipids in both strains were phosphatidylethanolamine, phosphatidylglycerol, unidentified phospholipid, unidentified aminophospholipid and unidentified lipids. The two strains reduced Fe(III) citrate, Fe(III) oxyhydroxide, Mn(IV) oxide and sodium selenate but did not reduce sodium sulfate. They were also differentiated by several phenotypic characteristics. Based on the polyphasic taxonomic data, IMCC35001 and IMCC35002 were considered to represent each novel species in the genus , for which the names sp. nov. (IMCC35001=KACC 21161=NBRC 113699) and (IMCC35002=KACC 21162=NBRC 113700) sp. nov. are proposed.

摘要

两株革兰氏阴性、三价铁还原、兼性厌氧、通过单一极鞭毛运动的杆状细菌菌株,分别命名为 IMCC35001 和 IMCC35002,分别从潮滩沉积物和海水中分离得到。16S rRNA 基因序列分析结果表明,IMCC35001 和 IMCC35002 的序列相似度为 96.6%,与 FUT3661(98.6%)和 Asr22-7(96.8%)最为密切相关。IMCC35001 和 IMCC35002 的基因组序列草图显示,基因组大小分别为 4.0 和 4.8 Mbp,DNA G+C 含量分别为 61.0 和 51.8 mol%。两株菌之间的平均核苷酸同一性(ANI)和数字 DNA-DNA 杂交(dDDH)值分别为 73.1%和 19.8%,表明它们是不同的种。两株菌的全基因组ANI 均≤84.4%,dDDH 均≤27.8%,与属内其他种相比,表明两株菌分别代表新种。两株菌均含有menaquinone(MK-7)和 ubiquinones(Q-7 和 Q-8)。菌株 IMCC35001 的主要脂肪酸为 iso-C、C9、C8 和 C,而菌株 IMCC35002 的主要脂肪酸为 C9、C 和 sum feature 3(C7 和/或 C6)。两株菌的主要极性脂分别为磷脂酰乙醇胺、磷脂酰甘油、未鉴定磷脂、未鉴定氨基磷脂和未鉴定脂。两株菌均能还原柠檬酸铁(III)、羟氧化铁(III)、氧化锰(IV)和硒酸钠,但不能还原硫酸钠。它们还通过几种表型特征来区分。基于多相分类学数据,IMCC35001 和 IMCC35002 被认为分别代表属中的新种,建议采用新种的名称 (IMCC35001=KACC 21161=NBRC 113699)和 (IMCC35002=KACC 21162=NBRC 113700)sp. nov.。

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