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sp. nov.,分离自海洋海绵。

sp. nov., isolated from marine sponge .

机构信息

Marine Biotechnology Laboratory, State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, PR China.

School of Zoology, Faculty of Life Sciences, Tel-Aviv University, Tel-Aviv, Israel.

出版信息

Int J Syst Evol Microbiol. 2024 Sep;74(9). doi: 10.1099/ijsem.0.006521.

Abstract

A novel bacterium, designated as MI-G, was isolated from marine sponge s . Cells of strain MI-G are Gram-stain-negative, aerobic, and rod or coccoid-ovoid in shape. MI-G is able to grow at 10-40 °C (optimum, 28 °C), with 1.0-8.0% (w/v) NaCl (optimum, 4.0%), and at pH 5.5-9.0 (optimum, pH 8.0). The 16S rRNA gene sequence of strain MI-G shows 98.35, 97.32 and 97.25% similarity to those of Ni-2088, TF-17 and AM134, respectively. Phylogenetic analysis also exhibits that strain MI-G falls within a clade comprising members of the genus (class ). The genome size of strain MI-G is 4478124 bp with a G+C content of 54.51 mol%. The average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between strain MI-G and other type strains are 71.61-76.44% (ANIb), 83.27-84.36% (ANIm) and 13.4-18.7% (dDDH), respectively. These values are significantly lower than the recommended threshold values for bacterial species delineation. Percentage of conserved proteins and average amino acid identity values among the genomes of strain MI-G and other closely related species are 52.04-59.13% and 67.47-77.21%, respectively. The major cellular fatty acids of MI-G are composed of summed feature 8 (C 7 or C 6), iso-C 3-OH, iso-C, C, and summed feature 9 (C iso 9 or C 10-methyl). The polar lipids of MI-G mainly consist of phosphatidylethanolamine, phosphatidylglycerol, aminolipid, and two glycolipids. The major respiratory quinone is Q-8. Based on differential phenotypic and phylogenetic data, strain MI-G is considered to represent a novel species of genus , for which the name sp. nov. is proposed. The type strain is MI-G (=MCCC 1K07826=KCTC 8081).

摘要

一种新型细菌,命名为 MI-G,从海洋海绵中分离出来。MI-G 菌株的细胞革兰氏阴性,需氧,呈杆状或球形。MI-G 可在 10-40°C(最佳温度 28°C)、1.0-8.0%(w/v)NaCl(最佳 4.0%)和 pH5.5-9.0(最佳 pH8.0)下生长。MI-G 菌株的 16S rRNA 基因序列与 Ni-2088、TF-17 和 AM134 的相似性分别为 98.35%、97.32%和 97.25%。系统发育分析还表明,菌株 MI-G 属于 属(类)的一个分支。MI-G 菌株的基因组大小为 4478124bp,G+C 含量为 54.51mol%。MI-G 菌株与其他模式菌株的平均核苷酸同一性(ANI)和数字 DNA-DNA 杂交(dDDH)值分别为 71.61-76.44%(ANIb)、83.27-84.36%(ANIm)和 13.4-18.7%(dDDH)。这些值明显低于细菌种划分的推荐阈值。MI-G 菌株和其他密切相关种的基因组中保守蛋白的百分比和平均氨基酸同一性值分别为 52.04-59.13%和 67.47-77.21%。MI-G 的主要细胞脂肪酸由总和特征 8(C7 或 C6)、异-C3-OH、异-C、C 和总和特征 9(Ciso9 或 C10-甲基)组成。MI-G 的极性脂主要由磷脂酰乙醇胺、磷脂酰甘油、胺脂和两种糖脂组成。主要呼吸醌为 Q-8。基于差异表型和系统发育数据,MI-G 菌株被认为代表了一个新的属种,命名为 sp. nov.。模式菌株为 MI-G(=MCCC 1K07826=KCTC 8081)。

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引用本文的文献

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Functional Genomic Characteristics of Marine Sponge-Associated MI-G.
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