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利用荧光原位杂交技术和种子总贮藏蛋白图谱对一些野豌豆属物种进行亲缘关系研究。

Genetic relationship study of some Vicia species by FISH and total seed storage protein patterns.

作者信息

Ali Hoda B M, Osman Samira A

机构信息

Genetics and Cytology Department, Genetic Engineering and Biotechnology Research Division, National Research Centre, P.O, Giza, 12622, Egypt.

出版信息

J Genet Eng Biotechnol. 2020 Jul 31;18(1):37. doi: 10.1186/s43141-020-00054-6.

Abstract

BACKGROUND

Genus Vicia is a member of family Fabaceae and comprises 180 to 210 species. The most important species is faba bean (Vicia faba) which is still one of the most favourable grain legumes over all the world. The genus contains some additional food crops and a number of forage plants and some other weedy strains such as Vicia angustifolia and Vicia cordata. The aim of the present investigation is to elucidate the phylogenetic relationships among four Vicia species, two species (Vicia angustifolia L. ssp. Angustifolia (2n = 12) and Vicia cordata wulfen ex Hoppe (2n = 10)) belong to section Vicia, Vicia dalmatica A. Kern (2n = 12, section Cracca), and Vicia johannis tamamsch (2n = 14, section Faba).

RESULTS

Two tools have been applied to identify the genetic relationships among the examined species, double fluorescence in situ hybridization (FISH) has been used to localize the sites of 5S and 45S rDNA, and sodium dodecyl sulfate-poly acrylamide gel electrophoretic (SDS-PAGE) patterns of total seed storage protein fractions. Double FISH experiment has not shown any variation in the loci number, but the positions along the chromosomes were different; both Vicia johannis and Vicia dalmatica exhibited the same interstitial 45S rRNA gene loci, while Vicia angustifolia and Vicia cordata have shown single large stretched 45S rRNA loci almost at the terminal region of the shortest chromosome. It could be concluded from the similarity matrix among the Vicia species as computed according to Jaccard coefficient from the SDS-PAGE, that V. cordata is similar to V. angustifolia and V. dalmatica by a percentage of 73 and 69%, respectively, and the most related species to V. johannis is V. dalmatica (~ 64%).

CONCLUSION

FISH and SDS-PAGE of the total seed storage proteins together reflected the similar genetic relationship among the studied species as fellows, V. angustifolia is more related to V. cordata then comes V. dalmatica and then V. johannis which is at a distal position from the other species.

摘要

背景

野豌豆属是豆科植物的一个属,包含180至210个物种。其中最重要的物种是蚕豆(Vicia faba),它至今仍是全球最受欢迎的食用豆类之一。该属还包括一些其他食用作物、多种饲料植物以及一些杂草品种,如窄叶野豌豆(Vicia angustifolia)和心形野豌豆(Vicia cordata)。本研究的目的是阐明四种野豌豆属物种之间的系统发育关系,其中两种(窄叶野豌豆Vicia angustifolia L. ssp. Angustifolia (2n = 12)和心形野豌豆Vicia cordata wulfen ex Hoppe (2n = 10))属于野豌豆组,达尔马提亚野豌豆Vicia dalmatica A. Kern (2n = 12, 山黧豆组),以及约翰尼斯野豌豆Vicia johannis tamamsch (2n = 14, 蚕豆组)。

结果

已应用两种工具来鉴定所研究物种之间的遗传关系,双重荧光原位杂交(FISH)用于定位5S和4S rDNA的位点,以及种子总贮藏蛋白组分的十二烷基硫酸钠 - 聚丙烯酰胺凝胶电泳(SDS - PAGE)图谱。双重FISH实验未显示基因座数量有任何变化,但沿染色体的位置不同;约翰尼斯野豌豆和达尔马提亚野豌豆均表现出相同的居间45S rRNA基因座,而窄叶野豌豆和心形野豌豆在最短染色体的末端区域几乎显示出单个大的延伸型45S rRNA基因座。根据SDS - PAGE的杰卡德系数计算的野豌豆属物种之间的相似性矩阵可以得出结论,心形野豌豆与窄叶野豌豆和达尔马提亚野豌豆的相似性分别为73%和69%,与约翰尼斯野豌豆关系最密切的物种是达尔马提亚野豌豆(约64%)。

结论

种子总贮藏蛋白的FISH和SDS - PAGE共同反映了所研究物种之间的相似遗传关系,如下所示,窄叶野豌豆与心形野豌豆的关系更为密切,其次是达尔马提亚野豌豆,然后是约翰尼斯野豌豆,它与其他物种处于较远的位置。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5f3a/7394970/62bc45d8c27f/43141_2020_54_Fig1_HTML.jpg

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