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微量热泳动法作为筛选参与细胞壁生物合成的糖基转移酶的强大工具。

Microscale thermophoresis as a powerful tool for screening glycosyltransferases involved in cell wall biosynthesis.

作者信息

Shao Wanchen, Sharma Rita, Clausen Mads H, Scheller Henrik V

机构信息

Joint BioEnergy Institute, Emeryville, CA 94608 USA.

Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA.

出版信息

Plant Methods. 2020 Jul 28;16:99. doi: 10.1186/s13007-020-00641-1. eCollection 2020.

DOI:10.1186/s13007-020-00641-1
PMID:32742297
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7389378/
Abstract

BACKGROUND

Identification and characterization of key enzymes associated with cell wall biosynthesis and modification is fundamental to gain insights into cell wall dynamics. However, it is a challenge that activity assays of glycosyltransferases are very low throughput and acceptor substrates are generally not available.

RESULTS

We optimized and validated microscale thermophoresis (MST) to achieve high throughput screening for glycosyltransferase substrates. MST is a powerful method for the quantitative analysis of protein-ligand interactions with low sample consumption. The technique is based on the motion of molecules along local temperature gradients, measured by fluorescence changes. We expressed glycosyltransferases as YFP-fusion proteins in tobacco and optimized the MST method to allow the determination of substrate binding affinity without purification of the target protein from the cell lysate. The application of this MST method to the β-1,4-galactosyltransferase GALS1 validated the capability to screen both nucleotide-sugar donor substrates and acceptor substrates. We also expanded the application to members of glycosyltransferase family GT61 in sorghum for substrate screening and function prediction.

CONCLUSIONS

This method is rapid and sensitive to allow determination of both donor and acceptor substrates of glycosyltransferases. MST enables high throughput screening of glycosyltransferases for likely substrates, which will narrow down their in vivo function and help to select candidates for further studies. Additionally, this method gives insight into biochemical mechanism of glycosyltransferase function.

摘要

背景

鉴定和表征与细胞壁生物合成及修饰相关的关键酶对于深入了解细胞壁动态变化至关重要。然而,糖基转移酶的活性测定通量非常低且通常没有受体底物可用,这是一个挑战。

结果

我们优化并验证了微量热泳动(MST)技术,以实现对糖基转移酶底物的高通量筛选。MST是一种强大的用于蛋白质-配体相互作用定量分析且样品消耗低的方法。该技术基于分子沿局部温度梯度的运动,通过荧光变化进行测量。我们在烟草中以黄色荧光蛋白(YFP)融合蛋白的形式表达糖基转移酶,并优化了MST方法,无需从细胞裂解物中纯化目标蛋白即可测定底物结合亲和力。将这种MST方法应用于β-1,4-半乳糖基转移酶GALS1,验证了其筛选核苷酸糖供体底物和受体底物的能力。我们还将该应用扩展到高粱中糖基转移酶家族GT61的成员,用于底物筛选和功能预测。

结论

该方法快速且灵敏,能够测定糖基转移酶的供体和受体底物。MST能够对糖基转移酶的潜在底物进行高通量筛选,这将缩小它们在体内的功能范围,并有助于选择进一步研究的候选物。此外,该方法有助于深入了解糖基转移酶功能的生化机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f06e/7389378/4977837672e9/13007_2020_641_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f06e/7389378/32a9ebab0735/13007_2020_641_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f06e/7389378/8e1d630ba814/13007_2020_641_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f06e/7389378/4ac9c66376a7/13007_2020_641_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f06e/7389378/85778838bfd2/13007_2020_641_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f06e/7389378/4977837672e9/13007_2020_641_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f06e/7389378/32a9ebab0735/13007_2020_641_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f06e/7389378/8e1d630ba814/13007_2020_641_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f06e/7389378/4ac9c66376a7/13007_2020_641_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f06e/7389378/85778838bfd2/13007_2020_641_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f06e/7389378/4977837672e9/13007_2020_641_Fig5_HTML.jpg

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