Welner Ditte Hededam, Shin David, Tomaleri Giovani P, DeGiovanni Andy M, Tsai Alex Yi-Lin, Tran Huu M, Hansen Sara Fasmer, Green Derek T, Scheller Henrik V, Adams Paul D
Joint BioEnergy Institute, Emeryville, California, United States of America.
Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.
PLoS One. 2017 Jun 9;12(6):e0177591. doi: 10.1371/journal.pone.0177591. eCollection 2017.
Molecular characterization of plant cell wall glycosyltransferases is a critical step towards understanding the biosynthesis of the complex plant cell wall, and ultimately for efficient engineering of biofuel and agricultural crops. The majority of these enzymes have proven very difficult to obtain in the needed amount and purity for such molecular studies, and recombinant cell wall glycosyltransferase production efforts have largely failed. A daunting number of strategies can be employed to overcome this challenge, including optimization of DNA and protein sequences, choice of expression organism, expression conditions, co-expression partners, purification methods, and optimization of protein solubility and stability. Hence researchers are presented with thousands of potential conditions to test. Ultimately, the subset of conditions that will be sampled depends on practical considerations and prior knowledge of the enzyme(s) being studied. We have developed a rational approach to this process. We devise a pipeline comprising in silico selection of targets and construct design, and high-throughput expression screening, target enrichment, and hit identification. We have applied this pipeline to a test set of Arabidopsis thaliana cell wall glycosyltransferases known to be challenging to obtain in soluble form, as well as to a library of cell wall glycosyltransferases from other plants including agricultural and biofuel crops. The screening results suggest that recombinant cell wall glycosyltransferases in general have a very low soluble:insoluble ratio in lysates from heterologous expression cultures, and that co-expression of chaperones as well as lysis buffer optimization can increase this ratio. We have applied the identified preferred conditions to Reversibly Glycosylated Polypeptide 1 from Arabidopsis thaliana, and processed this enzyme to near-purity in unprecedented milligram amounts. The obtained preparation of Reversibly Glycosylated Polypeptide 1 has the expected arabinopyranose mutase and autoglycosylation activities.
植物细胞壁糖基转移酶的分子特征分析是理解复杂植物细胞壁生物合成的关键步骤,最终对于生物燃料和农作物的高效工程改造也至关重要。事实证明,要获得进行此类分子研究所需数量和纯度的这些酶非常困难,重组细胞壁糖基转移酶的生产努力大多以失败告终。可以采用大量策略来克服这一挑战,包括优化DNA和蛋白质序列、选择表达生物体、表达条件、共表达伙伴、纯化方法以及优化蛋白质的溶解性和稳定性。因此,研究人员面临着数千种潜在条件需要测试。最终,将被采样的条件子集取决于实际考虑因素以及对所研究酶的先验知识。我们已经开发出一种针对此过程的合理方法。我们设计了一个流程,包括通过计算机模拟选择靶点和构建设计,以及高通量表达筛选、靶点富集和命中鉴定。我们已将此流程应用于一组已知难以获得可溶形式的拟南芥细胞壁糖基转移酶测试集,以及来自其他植物(包括农作物和生物燃料作物)的细胞壁糖基转移酶文库。筛选结果表明,一般来说,重组细胞壁糖基转移酶在异源表达培养物裂解物中的可溶与不可溶比例非常低,并且伴侣蛋白的共表达以及裂解缓冲液的优化可以提高这一比例。我们已将确定的优选条件应用于拟南芥的可逆糖基化多肽1,并以前所未有的毫克量将该酶加工至接近纯品。所获得的可逆糖基化多肽1制剂具有预期的阿拉伯吡喃糖变位酶和自糖基化活性。