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本文引用的文献

1
Substrate recognition by a bifunctional GH30-7 xylanase B from Talaromyces cellulolyticus.纤维二糖水解酶 GH30-7 木聚糖酶 B 对底物的识别。
FEBS Open Bio. 2020 Jun;10(6):1180-1189. doi: 10.1002/2211-5463.12873. Epub 2020 May 22.
2
GH30-7 Endoxylanase C from the Filamentous Fungus .GH30-7 内切木聚糖酶 C,来源于丝状真菌。
Appl Environ Microbiol. 2019 Oct 30;85(22). doi: 10.1128/AEM.01442-19. Print 2019 Nov 15.
3
A novel fungal GH30 xylanase with xylobiohydrolase auxiliary activity.一种具有木二糖水解酶辅助活性的新型真菌GH30木聚糖酶。
Biotechnol Biofuels. 2019 May 11;12:120. doi: 10.1186/s13068-019-1455-2. eCollection 2019.
4
Mode of Action of GH30-7 Reducing-End Xylose-Releasing Exoxylanase A (Xyn30A) from the Filamentous Fungus Talaromyces cellulolyticus.丝状真菌里氏木霉 GH30-7 外切木聚糖酶 A(Xyn30A)释放还原端木二糖的作用模式。
Appl Environ Microbiol. 2019 Jun 17;85(13). doi: 10.1128/AEM.00552-19. Print 2019 Jul 1.
5
Structural and functional characterization of a bifunctional GH30-7 xylanase B from the filamentous fungus .丝状真菌 GH30-7 木聚糖酶 B 的结构与功能表征。
J Biol Chem. 2019 Mar 15;294(11):4065-4078. doi: 10.1074/jbc.RA118.007207. Epub 2019 Jan 17.
6
Endo-xylanases as tools for production of substituted xylooligosaccharides with prebiotic properties.内切木聚糖酶在具有益生元特性的取代木低聚糖生产中的应用。
Appl Microbiol Biotechnol. 2018 Nov;102(21):9081-9088. doi: 10.1007/s00253-018-9343-4. Epub 2018 Sep 8.
7
Identification, heterologous expression and characterization of a novel glycoside hydrolase family 30 xylanase from the fungus Penicillium purpurogenum.来自产紫青霉的一种新型糖苷水解酶家族30木聚糖酶的鉴定、异源表达及特性分析
Carbohydr Res. 2018 Oct;468:45-50. doi: 10.1016/j.carres.2018.08.006. Epub 2018 Aug 16.
8
A plasmid borne, functionally novel glycoside hydrolase family 30 subfamily 8 endoxylanase from solventogenic .溶剂梭菌来源的具有新颖功能的质体承载的糖苷水解酶家族 30 亚家族 8 内切木聚糖酶
Biochem J. 2018 May 4;475(9):1533-1551. doi: 10.1042/BCJ20180050.
9
GH30 Glucuronoxylan-Specific Xylanase from Streptomyces turgidiscabies C56.链霉菌属 C56 来源的 GH30 型木聚糖酶特异性作用于木葡聚糖
Appl Environ Microbiol. 2018 Jan 31;84(4). doi: 10.1128/AEM.01850-17. Print 2018 Feb 15.
10
A novel member of glycoside hydrolase family 30 subfamily 8 with altered substrate specificity.糖苷水解酶家族30亚家族8的一个具有改变的底物特异性的新成员。
Acta Crystallogr D Biol Crystallogr. 2014 Nov;70(Pt 11):2950-8. doi: 10.1107/S1399004714019531. Epub 2014 Oct 23.

丝状真菌里氏木霉内切木聚糖酶 GH30-7 的晶体结构。

Crystal structure of GH30-7 endoxylanase C from the filamentous fungus Talaromyces cellulolyticus.

机构信息

Bioconversion Group, Research Institute for Sustainable Chemistry, National Institute of Advanced Industrial Science and Technology (AIST), 3-11-32 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-0046, Japan.

出版信息

Acta Crystallogr F Struct Biol Commun. 2020 Aug 1;76(Pt 8):341-349. doi: 10.1107/S2053230X20009024. Epub 2020 Jul 28.

DOI:10.1107/S2053230X20009024
PMID:32744245
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7397468/
Abstract

GH30-7 endoxylanase C from the cellulolytic fungus Talaromyces cellulolyticus (TcXyn30C) belongs to glycoside hydrolase family 30 subfamily 7, and specifically releases 2-(4-O-methyl-α-D-glucuronosyl)-xylobiose from glucuronoxylan, as well as various arabino-xylooligosaccharides from arabinoxylan. TcXyn30C has a modular structure consisting of a catalytic domain and a C-terminal cellulose-binding module 1 (CBM1). In this study, the crystal structure of a TcXyn30C mutant which lacks the CBM1 domain was determined at 1.65 Å resolution. The structure of the active site of TcXyn30C was compared with that of the bifunctional GH30-7 xylanase B from T. cellulolyticus (TcXyn30B), which exhibits glucuronoxylanase and xylobiohydrolase activities. The results revealed that TcXyn30C has a conserved structural feature for recognizing the 4-O-methyl-α-D-glucuronic acid (MeGlcA) substituent in subsite -2b. Additionally, the results demonstrated that Phe47 contributes significantly to catalysis by TcXyn30C. Phe47 is located in subsite -2b and also near the C-3 hydroxyl group of a xylose residue in subsite -2a. Substitution of Phe47 with an arginine residue caused a remarkable decrease in the catalytic efficiency towards arabinoxylan, suggesting the importance of Phe47 in arabinoxylan hydrolysis. These findings indicate that subsite -2b of TcXyn30C has unique structural features that interact with arabinofuranose and MeGlcA substituents.

摘要

来自纤维素分解真菌塔宾曲霉(Talaromyces cellulolyticus)的 GH30-7 内切木聚糖酶 GH30-7 endoxylanase C(TcXyn30C)属于糖苷水解酶家族 30 亚家族 7,它能从木聚糖上特异性地释放 2-(4-O-甲基-α-D-葡萄糖醛酸基)-木二糖,也能从阿拉伯木聚糖上释放各种阿拉伯糖-木低聚糖。TcXyn30C 具有模块化结构,由一个催化结构域和一个 C 端纤维素结合模块 1(CBM1)组成。在这项研究中,缺失了 CBM1 结构域的 TcXyn30C 突变体的晶体结构被解析到了 1.65 Å 的分辨率。与具有木聚糖酶和木二糖水解酶活性的塔宾曲霉 GH30-7 木聚糖酶 B(TcXyn30B)的活性位点结构进行比较,结果表明 TcXyn30C 具有识别结合在 -2b 亚位点上的 4-O-甲基-α-D-葡萄糖醛酸(MeGlcA)取代基的保守结构特征。此外,研究结果表明苯丙氨酸 47 对 TcXyn30C 的催化作用有重要贡献。苯丙氨酸 47 位于 -2b 亚位点,也靠近 -2a 亚位点中木糖残基的 C-3 羟基。用精氨酸取代苯丙氨酸 47 会导致对阿拉伯木聚糖的催化效率显著降低,这表明苯丙氨酸 47 在阿拉伯木聚糖水解中的重要性。这些发现表明 TcXyn30C 的 -2b 亚位点具有与阿拉伯呋喃糖和 MeGlcA 取代基相互作用的独特结构特征。