• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用重原子延长叠氮化物的振动寿命。

Extending the vibrational lifetime of azides with heavy atoms.

机构信息

Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.

Department of Chemistry, University of Nevada at Reno, Reno, NV 89557, USA.

出版信息

Phys Chem Chem Phys. 2020 Aug 24;22(32):18007-18013. doi: 10.1039/d0cp02814b.

DOI:10.1039/d0cp02814b
PMID:32749405
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8276756/
Abstract

The development of novel vibrational reporters (VRs), aka infrared (IR) probes, to study local environments and dynamic processes in biomolecules and materials continues to be an important area of research. Azides are important VRs because of their small size and large transition dipole strengths, however, their relatively short vibrational lifetimes (<2 ps) have limited their full potential. Herein we report that the vibrational lifetimes of azides can be increased by attaching them to heavy atoms and by using heavy 15N isotopes. Three group 14 atom triphenyl azides (Ph3CN3, Ph3SiN3, Ph3SnN3), and their triple-15N isotopomers, were synthesized in good yields. Tributyltin azide and its heavy isotopomer (Bu3Sn15N3) were also prepared to probe the effect of molecular scaffolding. The extinction coefficients for the natural abundance azides were determined, ranging from 900 to 1500 M-1 cm-1. The vibrational lifetimes of all azides were measured by pump-probe IR spectroscopy and each showed a major component with a short-to-moderate vibrational lifetime and a minor component with a much longer vibrational lifetime. Based on these results, the lifetime, aka the observation window, of an azide reporter can be extended from ∼2 ps to as long as ∼300 ps by a combination of isotopic labeling and heavy atom effect. 2D IR measurements of these compounds further confirmed the ability to observe these azide transitions at much longer timescales showing their utility to capture dynamic processes from tens to hundreds of picoseconds.

摘要

新型振动报告器(VRs),又名红外(IR)探针,用于研究生物分子和材料中的局部环境和动态过程,这一领域的研究仍在继续。由于叠氮化物尺寸小、跃迁偶极矩强度大,因此它们是重要的 VRs,但其相对较短的振动寿命(<2 ps)限制了它们的全部潜力。在此,我们报告说,通过将叠氮化物连接到重原子上并使用重 15N 同位素,可以增加它们的振动寿命。我们合成了三个第 14 族原子三苯基叠氮化物(Ph3CN3、Ph3SiN3、Ph3SnN3)及其三重 15N 同位素物,产率均较高。还制备了三丁基锡叠氮化物及其重同位素物(Bu3Sn15N3)以探究分子支架的影响。测定了天然丰度叠氮化物的消光系数,范围在 900 至 1500 M-1 cm-1。通过泵浦-探测 IR 光谱法测量了所有叠氮化物的振动寿命,每种叠氮化物都显示出一个具有短至中等振动寿命的主要组分和一个具有更长振动寿命的次要组分。基于这些结果,通过同位素标记和重原子效应的组合,可以将叠氮化物报告器的寿命,即观察窗口,从大约 2 ps 延长到长达大约 300 ps。对这些化合物进行二维 IR 测量进一步证实了可以在更长的时间尺度上观察到这些叠氮化物跃迁的能力,表明它们可以用于捕获从几十到几百皮秒的动态过程。

相似文献

1
Extending the vibrational lifetime of azides with heavy atoms.用重原子延长叠氮化物的振动寿命。
Phys Chem Chem Phys. 2020 Aug 24;22(32):18007-18013. doi: 10.1039/d0cp02814b.
2
Simultaneous enhancement of transition dipole strength and vibrational lifetime of an alkyne IR probe viaπ-d backbonding and vibrational decoupling.通过π-d 键反馈和振动去耦同时增强炔烃 IR 探针的跃迁偶极强度和振动寿命。
Phys Chem Chem Phys. 2019 Dec 7;21(45):24919-24925. doi: 10.1039/c9cp04356j. Epub 2019 Nov 7.
3
Dynamics in the isotropic phase of nematogens using 2D IR vibrational echo measurements on natural-abundance 13CN and extended lifetime probes.利用天然丰度 13CN 和扩展寿命探针的 2D IR 振动回波测量研究各向同性相中的向列相。
J Phys Chem B. 2013 Dec 5;117(48):15060-71. doi: 10.1021/jp4071955. Epub 2013 Nov 21.
4
Cyanamide as an Infrared Reporter: Comparison of Vibrational Properties between Nitriles Bonded to N and C Atoms.氰胺作为红外报告基团:与氮原子和碳原子相连的腈的振动性质比较。
J Phys Chem B. 2018 Apr 12;122(14):4035-4044. doi: 10.1021/acs.jpcb.8b00887. Epub 2018 Mar 22.
5
Long Vibrational Lifetime R-Selenocyanate Probes for Ultrafast Infrared Spectroscopy: Properties and Synthesis.长振动寿命 R-硒氰酸盐探针用于超快红外光谱学:性质和合成。
J Phys Chem B. 2021 Aug 12;125(31):8907-8918. doi: 10.1021/acs.jpcb.1c04939. Epub 2021 Aug 2.
6
Rational Design of an Acetylenic Infrared Probe with Enhanced Dipole Strength and Increased Vibrational Lifetime.具有增强偶极强度和增加振动寿命的炔基近红外探针的合理设计。
J Phys Chem B. 2019 Jul 25;123(29):6274-6281. doi: 10.1021/acs.jpcb.9b04925. Epub 2019 Jun 5.
7
Effect of isotope substitution on the Fermi resonance and vibrational lifetime of unnatural amino acids modified with IR probe: A 2D-IR and pump-probe study of 4-azido-L-phenyl alanine.同位素取代对 IR 探针修饰的非天然氨基酸的费米共振和振动寿命的影响:4-叠氮基-L-苯丙氨酸的 2D-IR 和泵浦探测研究。
J Chem Phys. 2020 Oct 28;153(16):164309. doi: 10.1063/5.0025289.
8
Vibrational dynamics of azide-derivatized amino acids studied by nonlinear infrared spectroscopy.通过非线性红外光谱研究叠氮基衍生化氨基酸的振动动力学。
J Chem Phys. 2015 Jun 7;142(21):212418. doi: 10.1063/1.4917032.
9
Two-dimensional IR spectroscopy reveals a hidden Fermi resonance band in the azido stretch spectrum of β-azidoalanine.二维红外光谱揭示了β-叠氮基丙氨酸的叠氮伸缩光谱中隐藏的费米共振带。
Phys Chem Chem Phys. 2020 Sep 8;22(34):19223-19229. doi: 10.1039/d0cp02693j.
10
Synthesis and Evaluation of the Sensitivity and Vibrational Lifetimes of Thiocyanate and Selenocyanate Infrared Reporters.硫氰酸盐和硒氰酸盐红外报告分子的灵敏度及振动寿命的合成与评估
RSC Adv. 2016;43(6):36231-36237. doi: 10.1039/C5RA27363C. Epub 2016 Apr 12.

引用本文的文献

1
Facile Generation of Cyanoselenocysteine as a Vibrational Label for Measuring Protein Dynamics on Longer Time Scales by 2D IR Spectroscopy.通过二维红外光谱轻松生成氰基硒代半胱氨酸作为用于在更长时间尺度上测量蛋白质动力学的振动标记。
Anal Chem. 2025 Jan 28;97(3):1673-1680. doi: 10.1021/acs.analchem.4c04689. Epub 2025 Jan 10.
2
Suppressing sidechain modes and improving structural resolution for 2D IR spectroscopy via vibrational lifetimes.通过振动寿命抑制二维红外光谱中的侧链模式并提高结构分辨率。
J Chem Phys. 2024 Aug 7;161(5). doi: 10.1063/5.0207523.
3
Ultrafast Spectroscopy under Vibrational Strong Coupling in Diphenylphosphoryl Azide.

本文引用的文献

1
Exploring the 2D-IR repertoire of the -SCN label to study site-resolved dynamics and solvation in the calcium sensor protein calmodulin.探索-SCN 标签的 2D-IR 曲目,以研究钙调蛋白中钙传感器蛋白的位点分辨动力学和溶剂化作用。
Phys Chem Chem Phys. 2020 Mar 11;22(10):5463-5475. doi: 10.1039/c9cp06808b.
2
2D-IR studies of cyanamides (NCN) as spectroscopic reporters of dynamics in biomolecules: Uncovering the origin of mysterious peaks.二维红外光谱研究氰酰胺(NCN)作为生物分子动力学的光谱探针:揭开神秘峰的起源。
J Chem Phys. 2020 Feb 21;152(7):074201. doi: 10.1063/1.5138654.
3
Unperturbed Detection of the Dynamic Structure in the Hydrophobic Core of Trp-Cage via Two-Dimensional Infrared Spectroscopy.
二苯基磷酰叠氮化物中振动强耦合下的超快光谱学
J Phys Chem A. 2024 Mar 14;128(10):1817-1824. doi: 10.1021/acs.jpca.3c07847. Epub 2024 Mar 4.
4
Efficient and Inexpensive Synthesis of N-Labeled 2-Azido-1,3-dimethylimidazolinium Salts Using NaNO Instead of NaNNN.使用亚硝酸钠而非叠氮化钠高效且廉价地合成 N 标记的 2-叠氮基-1,3-二甲基咪唑啉鎓盐。
ACS Omega. 2024 Jan 30;9(6):6556-6560. doi: 10.1021/acsomega.3c07147. eCollection 2024 Feb 13.
5
Inhibition of vibrational energy flow within an aromatic scaffold via heavy atom effect.通过重原子效应抑制芳环支架内的振动能量流动。
J Chem Phys. 2023 Jun 14;158(22). doi: 10.1063/5.0153760.
6
Versatile Vibrational Energy Sensors for Proteins.多功能蛋白质振动能量传感器。
Angew Chem Int Ed Engl. 2022 May 16;61(21):e202200648. doi: 10.1002/anie.202200648. Epub 2022 Apr 6.
7
Protein Dynamics by Two-Dimensional Infrared Spectroscopy.二维红外光谱法研究蛋白质动力学。
Annu Rev Anal Chem (Palo Alto Calif). 2021 Jul 27;14(1):299-321. doi: 10.1146/annurev-anchem-091520-091009.
通过二维红外光谱对色氨酸笼疏水核心动态结构进行无扰检测。
J Phys Chem Lett. 2020 Feb 6;11(3):832-837. doi: 10.1021/acs.jpclett.9b03706. Epub 2020 Jan 21.
4
Tuning Molecular Vibrational Energy Flow within an Aromatic Scaffold via Anharmonic Coupling.通过非谐耦合来调节芳香骨架内的分子振动能量流。
J Phys Chem A. 2019 Dec 12;123(49):10571-10581. doi: 10.1021/acs.jpca.9b08010. Epub 2019 Dec 3.
5
Rational Design of an Acetylenic Infrared Probe with Enhanced Dipole Strength and Increased Vibrational Lifetime.具有增强偶极强度和增加振动寿命的炔基近红外探针的合理设计。
J Phys Chem B. 2019 Jul 25;123(29):6274-6281. doi: 10.1021/acs.jpcb.9b04925. Epub 2019 Jun 5.
6
Site-Specific 1D and 2D IR Spectroscopy to Characterize the Conformations and Dynamics of Protein Molecular Recognition.基于一维和二维红外光谱对蛋白质分子识别构象和动力学的特征分析
J Phys Chem B. 2019 May 2;123(17):3551-3566. doi: 10.1021/acs.jpcb.9b00969. Epub 2019 Mar 21.
7
Vibrational Spectroscopy of N in the Gas and Condensed Phase.N 在气相和凝聚相中的振动光谱。
J Phys Chem B. 2019 Apr 18;123(15):3282-3290. doi: 10.1021/acs.jpcb.8b11430. Epub 2019 Apr 3.
8
Exploring local solvation environments of a heme protein using the spectroscopic reporter 4-cyano-l-phenylalanine.使用光谱报告分子4-氰基-L-苯丙氨酸探索血红素蛋白的局部溶剂化环境。
RSC Adv. 2018 Apr 9;8(24):13503-13512. doi: 10.1039/c8ra02000k. Epub 2018 Apr 10.
9
Synthesis of 5-Cyano-Tryptophan as a Two-Dimensional Infrared Spectroscopic Reporter of Structure.5-氰基色氨酸的合成作为结构的二维红外光谱报告者。
Angew Chem Int Ed Engl. 2018 Jun 18;57(25):7528-7532. doi: 10.1002/anie.201803849. Epub 2018 May 29.
10
Cyanamide as an Infrared Reporter: Comparison of Vibrational Properties between Nitriles Bonded to N and C Atoms.氰胺作为红外报告基团:与氮原子和碳原子相连的腈的振动性质比较。
J Phys Chem B. 2018 Apr 12;122(14):4035-4044. doi: 10.1021/acs.jpcb.8b00887. Epub 2018 Mar 22.