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使用自动化 FitNMR 分析峰模型解析重叠信号。

Resolving overlapped signals with automated FitNMR analytical peak modeling.

机构信息

Department of Chemistry, Wesleyan University, 52 Lawn Avenue, Middleton, CT 06459, USA.

Department of Chemistry, Wesleyan University, 52 Lawn Avenue, Middleton, CT 06459, USA.

出版信息

J Magn Reson. 2020 Sep;318:106773. doi: 10.1016/j.jmr.2020.106773. Epub 2020 Jun 13.

Abstract

Nuclear magnetic resonance (NMR) is a valuable tool for determining the structures of molecules and probing their dynamics. A longstanding problem facing both small-molecule and macromolecular NMR is overlapped signals in crowded spectra. To address this, we have developed a method that extracts peak features by fitting analytically derived models of NMR lineshapes. The approach takes into account the effects of truncation, apodization, and the resulting artifacts, while avoiding systematic errors that have affected other models. Even severely overlapped peaks, beyond the point of coalescence, can be distinguished in both simulated and experimental data. We show that the method can measure unresolved backbone scalar couplings directly from a 2D proton-nitrogen spectrum of a de novo designed mini protein. The algorithm is implemented in the FitNMR open-source R package and can be used to analyze nearly any type of single or multidimensional data from small molecules or biomolecules.

摘要

核磁共振(NMR)是确定分子结构和探测其动力学的一种有价值的工具。小分子和大分子 NMR 都面临着一个长期存在的问题,即在拥挤的光谱中存在重叠信号。为了解决这个问题,我们开发了一种通过拟合 NMR 线谱解析推导模型来提取峰特征的方法。该方法考虑了截断、频域窗函数和由此产生的伪影的影响,同时避免了影响其他模型的系统误差。即使是在超出峰融合点的严重重叠峰,也可以在模拟和实验数据中区分开来。我们表明,该方法可以直接从从头设计的小型蛋白质的二维质子-氮谱中测量未解析的骨架标量耦合。该算法在 FitNMR 开源 R 包中实现,可用于分析小分子或生物分子的几乎任何类型的单维或多维数据。

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