Eslami-Farsani Rasoul, Shareghi Behzad, Farhadian Sadegh, Momeni Lida
Department of Biology, Faculty of Science, Shahrekord University, Shahrekord, Iran.
Central Laboratory, Shahrekord University, Shahrekord, Iran.
J Biomol Struct Dyn. 2021 Oct;39(17):6384-6395. doi: 10.1080/07391102.2020.1798283. Epub 2020 Aug 10.
Osmolytes are generally well-known for the stabilization of proteins. The stabilizing impact of glucose on the dynamics and structure of myoglobin was probed through molecular simulation' docking and spectroscopic procedures. Using thermal stability examinations, the thermodynamic folding properties, point of melting temp. (), thermodynamic enthalpy change (Δ°) and thermodynamic entropy change (Δ°) were determined to find out the depiction of myoglobin folding. Glucose operated as an enhancer relative to myoglobin stabilization. The quenching static model was demonstrated by fluorescence spectroscopy. There was one binding site. According to the spectroscopy analysis, glucose was capable of protecting the native structural conformation of protein as well as preventing from protein unfolding. The fluorescence spectroscopy together with simulation through molecular docking method revealed that definitely hydrogen bonding plus van der Waals forces had major contributions to the stabilization of the myoglobin-glucose complex. Hence, the direct interactions contributed slightly to the stabilization impact whereas indirect interactions resulted from the hydration arise from a molecular mechanism primarily inducing the glucose stabilizing impacts. An elevation occurred in the of the myoglobin-glucose complex because of the greater H-bond creation and limited surface hydrophobic activity. Our findings indicate that glucose was capable of protecting the native conformation of myoglobin, clearly describing that glucose stabilization is preferred to be omitted from myoglobin surface. This is because water is more inclined to provide desirable interacting with myoglobin functional groups as compared to glucose. Also, MD results confirmed that the structural changes of myoglobin is the effect of complex formation with glucose.Communicated by Ramaswamy H. Sarma.
渗透溶质通常因能稳定蛋白质而广为人知。通过分子模拟、对接和光谱学方法探究了葡萄糖对肌红蛋白动力学和结构的稳定作用。利用热稳定性检测,测定了热力学折叠性质、熔点温度点()、热力学焓变(Δ°)和热力学熵变(Δ°),以了解肌红蛋白折叠的描述。相对于肌红蛋白的稳定,葡萄糖起到增强剂的作用。荧光光谱证实了静态猝灭模型。存在一个结合位点。根据光谱分析,葡萄糖能够保护蛋白质的天然结构构象并防止蛋白质展开。荧光光谱以及通过分子对接方法进行的模拟表明,氢键和范德华力肯定对肌红蛋白 - 葡萄糖复合物的稳定起主要作用。因此,直接相互作用对稳定作用的贡献较小,而由水合作用产生的间接相互作用源于主要诱导葡萄糖稳定作用的分子机制。由于形成了更多的氢键且表面疏水活性受限,肌红蛋白 - 葡萄糖复合物的 升高。我们的研究结果表明,葡萄糖能够保护肌红蛋白的天然构象,清楚地表明葡萄糖的稳定作用更倾向于从肌红蛋白表面去除。这是因为与葡萄糖相比,水更倾向于与肌红蛋白功能基团提供理想的相互作用。此外,分子动力学结果证实,肌红蛋白的结构变化是与葡萄糖形成复合物的结果。由拉马斯瓦米·H·萨尔马传达。