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肌红蛋白与甘油结合的深入研究:光谱和 MD 模拟方法。

Insight into the binding of glycerol with myoglobin: Spectroscopic and MD simulation approach.

机构信息

Department of Biology, Faculty of Science, Shahrekord University, Shahrekord, P. O. Box. 115, Iran.

Department of Biology, Faculty of Science, Shahrekord University, Shahrekord, P. O. Box. 115, Iran; Central Laboratory, Shahrekord University, Shahrekord, Iran.

出版信息

Int J Biol Macromol. 2020 Sep 15;159:433-443. doi: 10.1016/j.ijbiomac.2020.04.065. Epub 2020 Apr 30.

DOI:10.1016/j.ijbiomac.2020.04.065
PMID:32360459
Abstract

Stability of proteins plays a significant role not only in their biological function but also in medical science and protein engineering. Since proteins are only stable in special conditions, maintaining their stability and function in biological and biotechnological applications may pose serious challenges. Osmolytes provide a general method of shielding proteins from the unfolding and aggregation caused by extreme stress on the environment. In such studies, the researchers used spectroscopic and simulation approaches to study the alterations of the myoglobin structure and stability in glycerol presence. Experimental results showed a stability improvement of the complex myoglobin-glycerol. After the addition of glycerol resulting in the initiation of hydrogen bonds and higher levels of hydrophobicity, the increase of the T was observed. The static mode quenching observed in this study. Van der Waals forces and hydrogen bindings had a decisive and significant role concerning the stability of protein which was consistent with the modeling results. Molecular dynamics simulation showed that the glycerol presence could enhance myoglobin stability. The consistency between the theoretical studies and experimental findings demonstrates that the method proposed in this study could provide a useful method for protein-ligand complex investigations.

摘要

蛋白质的稳定性不仅在其生物功能中起着重要作用,在医学科学和蛋白质工程中也是如此。由于蛋白质只有在特殊条件下才稳定,因此在生物和生物技术应用中保持其稳定性和功能可能会带来严重的挑战。渗透剂为屏蔽蛋白质提供了一种通用方法,使其免受环境极端压力引起的展开和聚集的影响。在这些研究中,研究人员使用光谱和模拟方法研究了肌红蛋白结构在甘油存在下的变化和稳定性。实验结果表明,肌红蛋白-甘油复合物的稳定性得到了提高。甘油的加入导致氢键的形成和疏水性水平的提高,观察到 T 的增加。在这项研究中观察到静态模式猝灭。范德华力和氢键在蛋白质稳定性方面起着决定性和重要的作用,这与建模结果一致。分子动力学模拟表明,甘油的存在可以增强肌红蛋白的稳定性。理论研究和实验结果之间的一致性表明,本研究提出的方法可以为蛋白质-配体复合物的研究提供一种有用的方法。

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