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海景观基因组学揭示了造礁蜂巢虫(Sabellaria alveolata (L.))的种群隔离。

Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.).

机构信息

Conservation Biology Research Group, Department of Biological Sciences, University of Chester, Parkgate Road, Chester, CH1 4BJ, UK.

Laboratoire des Sciences de l'Environnement Marin, LEMAR UMR 6539 CNRS/UBO/IRD/Ifremer, Université de Brest (UBO), Université Européenne de Bretagne (UEB), Institut Universitaire Européen de la Mer (IUEM), 29280, Plouzané, France.

出版信息

BMC Evol Biol. 2020 Aug 10;20(1):100. doi: 10.1186/s12862-020-01658-9.

DOI:10.1186/s12862-020-01658-9
PMID:32778052
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7418442/
Abstract

BACKGROUND

Under the threat of climate change populations can disperse, acclimatise or evolve in order to avoid fitness loss. In light of this, it is important to understand neutral gene flow patterns as a measure of dispersal potential, but also adaptive genetic variation as a measure of evolutionary potential. In order to assess genetic variation and how this relates to environment in the honeycomb worm (Sabellaria alveolata (L.)), a reef-building polychaete that supports high biodiversity, we carried out RAD sequencing using individuals from along its complete latitudinal range. Patterns of neutral population genetic structure were compared to larval dispersal as predicted by ocean circulation modelling, and outlier analyses and genotype-environment association tests were used to attempt to identify loci under selection in relation to local temperature data.

RESULTS

We genotyped 482 filtered SNPs, from 68 individuals across nine sites, 27 of which were identified as outliers using BAYESCAN and ARLEQUIN. All outlier loci were potentially under balancing selection, despite previous evidence of local adaptation in the system. Limited gene flow was observed among reef-sites (F = 0.28 ± 0.10), in line with the low dispersal potential identified by the larval dispersal models. The North Atlantic reef emerged as a distinct population and this was linked to high local larval retention and the effect of the North Atlantic Current on dispersal.

CONCLUSIONS

As an isolated population, with limited potential for natural genetic or demographic augmentation from other reefs, the North Atlantic site warrants conservation attention in order to preserve not only this species, but above all the crucial functional ecological roles that are associated with their bioconstructions. Our study highlights the utility of using seascape genomics to identify populations of conservation concern.

摘要

背景

在气候变化的威胁下,种群可以通过扩散、适应或进化来避免适应度的下降。因此,了解中性基因流动模式作为扩散潜力的衡量标准,以及适应性遗传变异作为进化潜力的衡量标准是很重要的。为了评估遗传变异以及这种变异与蜂巢虫(Sabellaria alveolata (L.))环境的关系,我们对这个支持高生物多样性的造礁多毛类动物进行了 RAD 测序,这些个体来自其完整的纬度范围。中性种群遗传结构模式与海洋环流模型预测的幼虫扩散进行了比较,并进行了局域选择分析和基因型-环境关联测试,试图确定与局部温度数据相关的选择位点。

结果

我们从 9 个地点的 68 个个体中筛选出了 482 个过滤 SNP 进行了基因分型,其中 27 个 SNP 被 BAYESCAN 和 ARLEQUIN 鉴定为局域选择的偏离者。尽管系统中存在局部适应的先前证据,但所有偏离者的位点都可能处于平衡选择之下。珊瑚礁地点之间的基因流动有限(F = 0.28 ± 0.10),这与幼虫扩散模型确定的低扩散潜力相符。北大西洋珊瑚礁呈现出独特的种群,这与高局部幼虫保留率和北大西洋洋流对扩散的影响有关。

结论

作为一个孤立的种群,其从其他珊瑚礁获得自然遗传或人口增加的潜力有限,北大西洋种群需要保护关注,不仅是为了保护这个物种,而且最重要的是保护与其生物建筑相关的关键功能生态角色。我们的研究强调了利用景观基因组学来识别保护关注的种群的效用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ffe/7418442/fbf971d58e3d/12862_2020_1658_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ffe/7418442/41b5e6d86c67/12862_2020_1658_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ffe/7418442/00aafbfaebc4/12862_2020_1658_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ffe/7418442/f50bacbad9f5/12862_2020_1658_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ffe/7418442/e2a75b822032/12862_2020_1658_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ffe/7418442/de38ee0d0185/12862_2020_1658_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ffe/7418442/fbf971d58e3d/12862_2020_1658_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ffe/7418442/41b5e6d86c67/12862_2020_1658_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ffe/7418442/00aafbfaebc4/12862_2020_1658_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ffe/7418442/f50bacbad9f5/12862_2020_1658_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ffe/7418442/e2a75b822032/12862_2020_1658_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ffe/7418442/de38ee0d0185/12862_2020_1658_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ffe/7418442/fbf971d58e3d/12862_2020_1658_Fig6_HTML.jpg

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