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基于支架的[Fe]-氢化酶(Hmd)功能模型:在生物结构与分子功能之间架起桥梁。

Scaffold-Based Functional Models of [Fe]-Hydrogenase (Hmd): Building the Bridge between Biological Structure and Molecular Function.

机构信息

Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, United States.

出版信息

Acc Chem Res. 2020 Aug 18;53(8):1637-1647. doi: 10.1021/acs.accounts.0c00315. Epub 2020 Aug 4.

DOI:10.1021/acs.accounts.0c00315
PMID:32786339
Abstract

The well-known dinuclear [FeFe] and [NiFe] hydrogenase enzymes are redox-based proton reduction and H oxidation catalysts. In comparison, the structural and functional aspects of the nonredox hydrogenase, known as [Fe]-hydrogenase or Hmd, have been less explored because of the relatively recent crystallographic elucidation of the enzyme active site. Additionally, the synthetic challenges posed by the highly substituted and asymmetric coordination environment of the iron guanylylpyridinol (FeGP) cofactor have hampered functional biomimetic modeling studies to a large extent. The active site contains an octahedral low-spin Fe(II) center with the following coordination motifs: a bidentate acyl-pyridone moiety (C,N) and cysteinyl-S in a facial arrangement; two cis carbonyl ligands; and a HO/H binding site. In [Fe]-hydrogenase, heterolytic H activation putatively by the pendant pyridone/pyridonate-O base serving as a proton acceptor. Following H cleavage, an intermediate Fe-H species is thought to stereoselectively transfer a hydride to the substrate methenyl-HMPT, thus forming methylene-HMPT. In the past decade, chemists, inspired by the elegant organometallic chemistry inherent to the FeGP cofactor, have synthesized a number of faithful structural models. However, functional systems are still relatively limited and often rely on abiological ligands or metal centers that obfuscate a direct correlation to nature's design.Our group has developed a bioinspired suite of synthetic analogues of Hmd to better understand the effects of structure on the stability and functionality of the Hmd active site, with a special emphasis on using a scaffold-based ligand design. This systematic approach has contributed to a deeper understanding of the unique ligand array of [Fe]-hydrogenase in nature and has ultimately resulted in the first functional synthetic models without the aid of abiological ligands. This Account reviews the reactivity of the functional anthracene-scaffolded synthetic models developed by our group in the context of current mechanistic understanding drawn from both protein crystallography and computational studies. Furthermore, we introduce a novel thermodynamic framework to place the reactivity of our model systems in context and provide an outlook on the future study of [Fe]-hydrogenase synthetic models through both a structural and functional lens.

摘要

众所周知,二核 [FeFe] 和 [NiFe] 氢化酶是基于氧化还原的质子还原和 H 氧化催化剂。相比之下,由于该酶活性位点的相对较新的晶体学阐明,非氧化还原氢化酶(称为 [Fe]-氢化酶或 Hmd)的结构和功能方面的研究较少。此外,由于铁鸟嘌呤吡啶醇(FeGP)辅因子高度取代和不对称的配位环境带来的合成挑战,在很大程度上阻碍了功能仿生模拟研究。活性位点包含一个八面体低自旋 Fe(II) 中心,具有以下配位模式:双齿酰基-吡啶酮部分(C,N)和半胱氨酸-S 在面排列;两个顺式羰基配体;和一个 HO/H 结合位点。在 [Fe]-氢化酶中,杂裂解 H 被假定通过悬垂吡啶酮/吡啶酸盐-O 碱基作为质子受体进行。在 H 裂解后,认为中间体 Fe-H 物种立体选择性地将氢化物转移给底物亚甲基-HMPT,从而形成亚甲基-HMPT。在过去的十年中,受到 FeGP 辅因子固有的优雅有机金属化学的启发,化学家们合成了许多忠实的结构模型。然而,功能系统仍然相对有限,并且经常依赖于非生物配体或金属中心,这使得与自然界设计的直接相关性变得模糊。我们的小组开发了一系列仿生合成模拟物 Hmd,以更好地了解结构对 Hmd 活性位点稳定性和功能的影响,特别强调使用基于支架的配体设计。这种系统方法有助于更深入地了解自然界中 [Fe]-氢化酶独特的配体阵列,并最终导致在没有非生物配体帮助的情况下第一个功能合成模型。本报告综述了我们小组在当前从蛋白质晶体学和计算研究中得出的机制理解的背景下,对功能蒽支架合成模型的反应性的研究。此外,我们引入了一种新的热力学框架,将我们模型系统的反应性置于上下文中,并通过结构和功能的角度展望了未来对 [Fe]-氢化酶合成模型的研究。

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引用本文的文献

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