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Identification of Antimicrobial Peptides from Novel Lactobacillus fermentum Strain.
Protein J. 2020 Feb;39(1):73-84. doi: 10.1007/s10930-019-09879-8.
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Assembly of long, error-prone reads using repeat graphs.
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
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Characterization of Erythromycin and Tetracycline Resistance in Strains.
Int J Microbiol. 2018 Nov 11;2018:3912326. doi: 10.1155/2018/3912326. eCollection 2018.
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
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Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
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Circlator: automated circularization of genome assemblies using long sequencing reads.
Genome Biol. 2015 Dec 29;16:294. doi: 10.1186/s13059-015-0849-0.
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CAMPR3: a database on sequences, structures and signatures of antimicrobial peptides.
Nucleic Acids Res. 2016 Jan 4;44(D1):D1094-7. doi: 10.1093/nar/gkv1051. Epub 2015 Oct 13.
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A large-scale structural classification of antimicrobial peptides.
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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.
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