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从马铃薯叶际分离出的潜在益生菌GM菌株的基因组序列数据草案。

Draft genome sequence data of strain GM, isolated from potato phyllosphere as a potential probiotic.

作者信息

Pudova Daria S, Lutfullin Marat T, Shagimardanova Elena I, Hadieva Guzel F, Shigapova Leyla, Toymentseva Anna A, Kabanov Daniil A, Mardanova Ayslu M, Vologin Semen G, Sharipova Margarita R

机构信息

Institute of Fundamental Medicine and Biology, Kazan (Volga region) Federal University, Kazan, Russia.

TatSRIA - Subdivision of FIC KazanSC of RAS, Kazan, Russia.

出版信息

Data Brief. 2018 Nov 24;21:2504-2509. doi: 10.1016/j.dib.2018.11.107. eCollection 2018 Dec.

DOI:10.1016/j.dib.2018.11.107
PMID:30761330
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6288392/
Abstract

Here we present the morphological and physiological properties of isolated strain GM, its draft genome sequence as well as annotation and analysis of its genome. Initial analysis of MALDI-TOF mass spectrometry, 16S rRNA gene analysis and DNA-DNA hybridization revealed that the strain belongs to the species . The 4,678,122 bp draft genome consist of 17 scaffolds encoding 4588 proteins and 137 RNAs. Annotation of the genome sequence revealed cellulase and protease encoding genes, genes of adhesion proteins and putative genes responsible for the biosynthesis of antimicrobial metabolites. The Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession number NTMQ00000000.1 (https://www.ncbi.nlm.nih.gov/nuccore/NZ_NTMQ00000000.1).

摘要

在此，我们展示了分离菌株GM的形态学和生理学特性、其基因组草图序列以及基因组注释与分析。基质辅助激光解吸电离飞行时间质谱（MALDI-TOF MS）的初步分析、16S rRNA基因分析和DNA-DNA杂交表明，该菌株属于某一物种。该4,678,122 bp的基因组草图由17个支架组成，编码4588个蛋白质和137个RNA。基因组序列注释揭示了纤维素酶和蛋白酶编码基因、粘附蛋白基因以及负责抗菌代谢物生物合成的假定基因。全基因组鸟枪法测序项目已保存在DDBJ/EMBL/GenBank中，登录号为NTMQ00000000.1（https://www.ncbi.nlm.nih.gov/nuccore/NZ_NTMQ00000000.1）。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c326/6288392/7468ef053bdf/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c326/6288392/012ff5bcb7e1/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c326/6288392/7468ef053bdf/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c326/6288392/012ff5bcb7e1/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c326/6288392/7468ef053bdf/gr2.jpg

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