菌株BB001的全基因组序列，BB001是来自候选门（TM7）的一种新型体表共生细菌。
Complete Genome Sequence of Strain BB001, a Novel Epibiont Bacterium from the Candidate Phylum (TM7).
作者信息
Lamont Eleanor I, Hendrickson Erik L, McLean Jeffrey S, He Xuesong, Bor Batbileg
机构信息
Department of Periodontics, University of Washington, Seattle, Washington, USA.
Department of Microbiology, The Forsyth Institute, Cambridge, Massachusetts, USA.
出版信息
Microbiol Resour Announc. 2020 Aug 20;9(34):e00810-20. doi: 10.1128/MRA.00810-20.
Abstract
Strain BB001 is cultivated from the human oral cavity on its basibiont bacterial host sp. It is an ultrasmall bacterium with a reduced genome that grows obligately on its bacterial host. BB001 is the first member of human microbiome taxon 957.
摘要
菌株BB001是从人类口腔中的基础共生细菌宿主sp. 培养而来。它是一种基因组缩减的超小型细菌，专性寄生于其细菌宿主上。BB001是人类微生物组分类群957的首个成员。
相似文献
1
Complete Genome Sequence of Strain BB001, a Novel Epibiont Bacterium from the Candidate Phylum (TM7).菌株BB001的全基因组序列，BB001是来自候选门（TM7）的一种新型体表共生细菌。
Microbiol Resour Announc. 2020 Aug 20;9(34):e00810-20. doi: 10.1128/MRA.00810-20.
2
Draft Genome Sequence of Actinomyces odontolyticus subsp. actinosynbacter Strain XH001, the Basibiont of an Oral TM7 Epibiont.溶牙放线菌放线共生亚种菌株XH001（一种口腔TM7附生菌的基础菌）的基因组序列草图
Genome Announc. 2016 Feb 4;4(1):e01685-15. doi: 10.1128/genomeA.01685-15.
3
Complete Genome Sequence of Strain AC001, a Novel Cultured Member of the Human Oral Microbiome from the Candidate Phylum (TM7).菌株AC001的全基因组序列，AC001是来自候选门（TM7）的人类口腔微生物组的一个新培养成员。
Microbiol Resour Announc. 2019 Oct 17;8(42):e01158-19. doi: 10.1128/MRA.01158-19.
4
Insights Obtained by Culturing Saccharibacteria With Their Bacterial Hosts.从培养菌及其细菌宿主中获得的新认识
J Dent Res. 2020 Jun;99(6):685-694. doi: 10.1177/0022034520905792. Epub 2020 Feb 19.
5
Complete Genome Sequence of Strain PM004, a Novel Cultured Member of the Human Oral Microbiome from the Candidate Phylum (TM7).菌株PM004的全基因组序列，PM004是来自候选菌门（TM7）的人类口腔微生物组的一种新培养成员。
Microbiol Resour Announc. 2019 Oct 17;8(42):e01159-19. doi: 10.1128/MRA.01159-19.
6
Transcriptome of Epibiont Saccharibacteria Strain TM7x During the Establishment of Symbiosis.共生关系建立过程中附生菌 Saccharibacteria 菌株 TM7x 的转录组。
J Bacteriol. 2022 Sep 20;204(9):e0011222. doi: 10.1128/jb.00112-22. Epub 2022 Aug 17.
7
Saccharibacteria (TM7) in the Human Oral Microbiome.人体口腔微生物组中的 Saccharibacteria（TM7）。
J Dent Res. 2019 May;98(5):500-509. doi: 10.1177/0022034519831671. Epub 2019 Mar 20.
8
Acquisition of the arginine deiminase system benefits epiparasitic Saccharibacteria and their host bacteria in a mammalian niche environment.在哺乳动物生境中，精氨酸脱亚氨酶系统的获得使外寄生的 Saccharibacteria 及其宿主细菌受益。
Proc Natl Acad Sci U S A. 2022 Jan 11;119(2). doi: 10.1073/pnas.2114909119.
9
Isolation and cultivation of candidate phyla radiation (TM7) bacteria in coculture with bacterial hosts.与细菌宿主共培养条件下候选门辐射类（TM7）细菌的分离与培养。
J Oral Microbiol. 2020 Sep 6;12(1):1814666. doi: 10.1080/20002297.2020.1814666.
10
Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle.一种与人类相关的TM7系统发育型的培养揭示了其基因组缩减和体表寄生的生活方式。
Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):244-9. doi: 10.1073/pnas.1419038112. Epub 2014 Dec 22.
引用本文的文献
1
Complete genome of sp. strain BB002, isolated and cultivated from a site of periodontal disease.从牙周疾病部位分离培养的[具体菌种名称]菌株BB002的全基因组。 （注：原文中“sp.”处应补充具体菌种名称，否则无法准确完整翻译）
Microbiol Resour Announc. 2025 Jan 16;14(1):e0063724. doi: 10.1128/mra.00637-24. Epub 2024 Nov 27.
2
Ultrasmall epibiont strain TM7x and host bacteria transcriptional activity after initial host parasitism.初次宿主寄生后超小外共生菌TM7x和宿主细菌的转录活性。
J Oral Microbiol. 2023 Nov 30;16(1):2287349. doi: 10.1080/20002297.2023.2287349. eCollection 2024.
3
Transcriptome of Epibiont Saccharibacteria Strain TM7x During the Establishment of Symbiosis.共生关系建立过程中附生菌 Saccharibacteria 菌株 TM7x 的转录组。
J Bacteriol. 2022 Sep 20;204(9):e0011222. doi: 10.1128/jb.00112-22. Epub 2022 Aug 17.
4
Strain-Level Variation and Diverse Host Bacterial Responses in Episymbiotic Saccharibacteria.共生菌囊菌中菌株水平的变化和不同的宿主细菌反应
mSystems. 2022 Apr 26;7(2):e0148821. doi: 10.1128/msystems.01488-21. Epub 2022 Mar 28.
本文引用的文献
1
Acquisition and Adaptation of Ultra-small Parasitic Reduced Genome Bacteria to Mammalian Hosts.获取和适应超小型寄生减基因组细菌与哺乳动物宿主。
Cell Rep. 2020 Jul 21;32(3):107939. doi: 10.1016/j.celrep.2020.107939.
2
Insights Obtained by Culturing Saccharibacteria With Their Bacterial Hosts.从培养菌及其细菌宿主中获得的新认识
J Dent Res. 2020 Jun;99(6):685-694. doi: 10.1177/0022034520905792. Epub 2020 Feb 19.
3
Targeted isolation and cultivation of uncultivated bacteria by reverse genomics.反向基因组学靶向分离和培养未培养细菌。
Nat Biotechnol. 2019 Nov;37(11):1314-1321. doi: 10.1038/s41587-019-0260-6. Epub 2019 Sep 30.
4
Rapid evolution of decreased host susceptibility drives a stable relationship between ultrasmall parasite TM7x and its bacterial host.宿主易感性降低的快速进化驱动了 ultrasmall 寄生虫 TM7x 与其细菌宿主之间稳定的关系。
Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):12277-12282. doi: 10.1073/pnas.1810625115. Epub 2018 Nov 15.
5
Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes.无领导转录和非典型基因的建模可提高原核生物中基因预测的准确性。
Genome Res. 2018 Jul;28(7):1079-1089. doi: 10.1101/gr.230615.117. Epub 2018 May 17.
6
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.MEGA X：跨越计算平台的分子进化遗传学分析。
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549. doi: 10.1093/molbev/msy096.
7
Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life.主要的新微生物群体扩展了生物多样性，并改变了我们对生命之树的理解。
Cell. 2018 Mar 8;172(6):1181-1197. doi: 10.1016/j.cell.2018.02.016.
8
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
9
Phenotypic and Physiological Characterization of the Epibiotic Interaction Between TM7x and Its Basibiont Actinomyces.TM7x与其基底菌放线菌之间体表相互作用的表型和生理学特征
Microb Ecol. 2016 Jan;71(1):243-55. doi: 10.1007/s00248-015-0711-7. Epub 2015 Nov 23.
10
Roary: rapid large-scale prokaryote pan genome analysis.Roary：快速大规模原核生物泛基因组分析
Bioinformatics. 2015 Nov 15;31(22):3691-3. doi: 10.1093/bioinformatics/btv421. Epub 2015 Jul 20.
Zotero 插件