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本文引用的文献

1
Phenotypic and Physiological Characterization of the Epibiotic Interaction Between TM7x and Its Basibiont Actinomyces.TM7x与其基底菌放线菌之间体表相互作用的表型和生理学特征
Microb Ecol. 2016 Jan;71(1):243-55. doi: 10.1007/s00248-015-0711-7. Epub 2015 Nov 23.
2
Microbial species delineation using whole genome sequences.利用全基因组序列进行微生物物种划分。
Nucleic Acids Res. 2015 Aug 18;43(14):6761-71. doi: 10.1093/nar/gkv657. Epub 2015 Jul 6.
3
Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle.一种与人类相关的TM7系统发育型的培养揭示了其基因组缩减和体表寄生的生活方式。
Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):244-9. doi: 10.1073/pnas.1419038112. Epub 2014 Dec 22.
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An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome.一种体外生物膜模型系统,能够维持高度可重复的物种和代谢多样性,接近人类口腔微生物组。
Microbiome. 2013 Oct 2;1(1):25. doi: 10.1186/2049-2618-1-25.
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Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.从嵌合MDA产物中组装单细胞基因组和微型宏基因组。
J Comput Biol. 2013 Oct;20(10):714-37. doi: 10.1089/cmb.2013.0084.
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Accurate and universal delineation of prokaryotic species.精确且通用的原核生物种系划分。
Nat Methods. 2013 Sep;10(9):881-4. doi: 10.1038/nmeth.2575. Epub 2013 Jul 28.
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
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Identification of oral bacteria associated with crevicular epithelial cells from chronic periodontitis lesions.慢性牙周炎病变龈沟上皮细胞相关口腔细菌的鉴定。
J Med Microbiol. 2006 May;55(Pt 5):609-615. doi: 10.1099/jmm.0.46417-0.
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Defining the normal bacterial flora of the oral cavity.界定口腔正常细菌菌群。
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Molecular analysis of bacterial species associated with childhood caries.与儿童龋齿相关细菌种类的分子分析。
J Clin Microbiol. 2002 Mar;40(3):1001-9. doi: 10.1128/JCM.40.3.1001-1009.2002.

溶牙放线菌放线共生亚种菌株XH001(一种口腔TM7附生菌的基础菌)的基因组序列草图

Draft Genome Sequence of Actinomyces odontolyticus subsp. actinosynbacter Strain XH001, the Basibiont of an Oral TM7 Epibiont.

作者信息

McLean Jeffrey S, Liu Quanhui, Bor Batbileg, Bedree Joseph K, Cen Lujia, Watling Michael, To Thao T, Bumgarner Roger E, He Xuesong, Shi Wenyuan

机构信息

Department of Periodontics, University of Washington, Seattle, Washington, USA

Department of Periodontics, University of Washington, Seattle, Washington, USA.

出版信息

Genome Announc. 2016 Feb 4;4(1):e01685-15. doi: 10.1128/genomeA.01685-15.

DOI:10.1128/genomeA.01685-15
PMID:26847892
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4742689/
Abstract

Here, we present the draft genome sequence of Actinomyces odontolyticus subsp. actinosynbacter strain XH001, isolated from the human oral cavity. Uniquely, it was discovered as a host bacterium to the ultrasmall epibiont TM7x, which is the first cultivated member of "Candidatus Saccharibacteria" (formerly candidate phylum TM7).

摘要

在此,我们展示了从人类口腔分离出的溶牙放线菌放线共生亚种菌株XH001的基因组序列草图。独特的是,它被发现是超小外共生菌TM7x的宿主细菌,TM7x是“暂定糖细菌门”(以前称为暂定菌门TM7)的首个培养成员。