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基于 DNA-PAINT-ERS 的快速多重超分辨成像。

Fast and multiplexed superresolution imaging with DNA-PAINT-ERS.

机构信息

Knight Cancer Early Detection Advanced Research Center, Oregon Health and Science University, 2720 S. Moody Ave., Portland, OR, 97201, USA.

Center for Spatial Systems Biomedicine, Oregon Health and Science University, 2730 S. Moody Ave., Portland, OR, 97201, USA.

出版信息

Nat Commun. 2020 Aug 28;11(1):4339. doi: 10.1038/s41467-020-18181-6.

Abstract

DNA points accumulation for imaging in nanoscale topography (DNA-PAINT) facilitates multiplexing in superresolution microscopy but is practically limited by slow imaging speed. To address this issue, we propose the additions of ethylene carbonate (EC) to the imaging buffer, sequence repeats to the docking strand, and a spacer between the docking strand and the affinity agent. Collectively termed DNA-PAINT-ERS (E = EC, R = Repeating sequence, and S = Spacer), these strategies can be easily integrated into current DNA-PAINT workflows for both accelerated imaging speed and improved image quality through optimized DNA hybridization kinetics and efficiency. We demonstrate the general applicability of DNA-PAINT-ERS for fast, multiplexed superresolution imaging using previously validated oligonucleotide constructs with slight modifications.

摘要

DNA 点积累用于纳米级形貌成像(DNA-PAINT)可促进超分辨率显微镜的多重成像,但实际上受到成像速度慢的限制。为了解决这个问题,我们建议在成像缓冲液中添加碳酸亚乙酯(EC)、对接链中的重复序列以及对接链和亲和剂之间的间隔物。这些策略统称为 DNA-PAINT-ERS(E=EC,R=重复序列,S=间隔物),它们可以很容易地整合到当前的 DNA-PAINT 工作流程中,通过优化 DNA 杂交动力学和效率,既可以加快成像速度,又可以提高图像质量。我们通过略微修改先前验证的寡核苷酸构建体,证明了 DNA-PAINT-ERS 对于快速、多重超分辨率成像的普遍适用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22b5/7455722/f94907ba90cb/41467_2020_18181_Fig1_HTML.jpg

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